Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GO174_RS13605 Genome accession   NZ_CP046857
Coordinates   2870681..2871796 (+) Length   371 a.a.
NCBI ID   WP_020332566.1    Uniprot ID   S7J652
Organism   Vibrio fluvialis strain 2015AW-0233     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2865681..2876796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO174_RS13585 rsmB 2866614..2867894 (-) 1281 WP_020430418.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  GO174_RS13590 fmt 2867945..2868892 (-) 948 WP_158125561.1 methionyl-tRNA formyltransferase -
  GO174_RS13595 def 2868911..2869423 (-) 513 WP_020332568.1 peptide deformylase -
  GO174_RS13600 - 2869563..2870681 (+) 1119 WP_158125562.1 LysM peptidoglycan-binding domain-containing protein -
  GO174_RS13605 dprA 2870681..2871796 (+) 1116 WP_020332566.1 DNA-processing protein DprA Machinery gene
  GO174_RS13610 - 2871799..2872275 (+) 477 WP_020332565.1 DUF494 family protein -
  GO174_RS13615 - 2872306..2872893 (+) 588 WP_020332564.1 type I DNA topoisomerase -
  GO174_RS13620 - 2872927..2874060 (-) 1134 WP_158125563.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GO174_RS13625 purE 2874064..2874549 (-) 486 WP_020332562.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GO174_RS13630 - 2874748..2875305 (+) 558 WP_154183775.1 L-threonylcarbamoyladenylate synthase -
  GO174_RS13635 hemF 2875325..2876239 (+) 915 WP_158125564.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40529.98 Da        Isoelectric Point: 6.2298

>NTDB_id=409014 GO174_RS13605 WP_020332566.1 2870681..2871796(+) (dprA) [Vibrio fluvialis strain 2015AW-0233]
MLERDLAAWLAFSFTPQLGIRTLQRLASRYALSDLKQHLNRDGLAVGLKDNQIQYLQRQADQDVDACLRWSDQADNRHIL
TPFHAHYPSLLTEIAAAPPVLFVEGRLEALRAPQIAIVGSRNASIDSQQIAHQFATQLVEHGLVVTSGLALGIDGYAHDG
ALKAGGETIAVLGSGLECIYPARHRALAGRIVDRGALVSEFRPDAKPRPDHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQSREVFVVPGSIRNPNSLGSNQLIRQGACLVQHVDHILEEVSSLMDWSRNQSQPEQTELFSGTYNEEELPFPEL
LANVGGEATPVDILANRTNIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=409014 GO174_RS13605 WP_020332566.1 2870681..2871796(+) (dprA) [Vibrio fluvialis strain 2015AW-0233]
ATGCTCGAACGCGATCTGGCTGCTTGGCTGGCTTTCAGTTTTACTCCTCAACTCGGTATCCGAACACTGCAGCGTTTAGC
CAGTCGTTACGCGCTGTCTGACCTCAAACAACACCTGAATCGTGACGGCTTGGCCGTAGGGCTGAAAGACAACCAGATTC
AGTATTTGCAGCGGCAGGCCGATCAAGACGTCGATGCCTGCCTGCGTTGGAGTGATCAGGCTGATAATCGCCATATTCTG
ACGCCGTTTCATGCGCACTATCCCTCGTTATTGACCGAAATCGCCGCCGCTCCGCCAGTGCTGTTTGTGGAGGGGCGGCT
TGAAGCGCTGCGTGCGCCGCAAATTGCTATTGTCGGAAGTCGCAACGCCAGTATCGACAGTCAGCAAATCGCTCATCAAT
TTGCCACGCAATTGGTCGAACACGGTTTGGTGGTCACCAGTGGTCTGGCGCTTGGTATTGATGGCTATGCGCATGATGGC
GCACTCAAAGCGGGTGGGGAAACTATTGCGGTGCTGGGCTCGGGGCTGGAATGTATTTATCCGGCTCGCCATCGCGCGTT
GGCGGGGCGTATTGTTGACAGAGGCGCCTTGGTGTCGGAATTTCGCCCTGATGCCAAGCCTCGACCTGATCATTTTCCGC
GTCGTAATCGTATTATCAGTGGGTTGTCATTGGGCGTTCTGGTGGTGGAAGCGGCGGAAAAAAGTGGCTCGCTCATCACC
GCGCGTTATGCCGCCGAACAGAGCCGAGAGGTGTTTGTCGTGCCGGGCTCAATTCGCAACCCGAATAGCCTCGGCAGTAA
CCAGTTGATTCGACAAGGGGCGTGTTTGGTACAACATGTCGATCATATTCTCGAAGAAGTCAGCAGTTTGATGGACTGGA
GCCGAAATCAGTCACAACCTGAGCAGACAGAACTTTTTTCTGGCACATATAACGAAGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGGGGAGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGATGTCATGAT
GCAGCTCCTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7J652

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

64.69

100

0.647
  dprA Vibrio campbellii strain DS40M4

64.85

98.922

0.642
  dprA Glaesserella parasuis strain SC1401

45.699

100

0.458
  dprA Legionella pneumophila strain ERS1305867

43.407

98.113

0.426
  dprA Neisseria meningitidis MC58

37.437

100

0.402
  dprA Neisseria meningitidis strain C311

37.437

100

0.402
  dprA Haemophilus influenzae Rd KW20

44.012

90.027

0.396
  dprA Acinetobacter baumannii strain A118

42.229

91.914

0.388
  dprA Neisseria gonorrhoeae MS11

35.93

100

0.385
  dprA Acinetobacter baumannii D1279779

42.183

91.375

0.385
  dprA Neisseria gonorrhoeae strain FA1090

35.443

100

0.377
  dprA Acinetobacter baylyi ADP1

41.916

90.027

0.377

Multiple sequence alignment