Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GPY11_RS16935 | Genome accession | NZ_CP046851 |
| Coordinates | 2905794..2906231 (-) | Length | 145 a.a. |
| NCBI ID | WP_158175124.1 | Uniprot ID | - |
| Organism | Grimontia hollisae strain F9489 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2900794..2911231
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY11_RS16915 | coaE | 2901237..2901860 (-) | 624 | WP_005502108.1 | dephospho-CoA kinase | - |
| GPY11_RS16920 | pilD | 2901864..2902733 (-) | 870 | WP_114996182.1 | prepilin peptidase | Machinery gene |
| GPY11_RS16925 | pilC | 2902841..2904064 (-) | 1224 | WP_114996181.1 | type II secretion system F family protein | Machinery gene |
| GPY11_RS16930 | pilB | 2904076..2905770 (-) | 1695 | WP_158175123.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPY11_RS16935 | pilA | 2905794..2906231 (-) | 438 | WP_158175124.1 | pilin | Machinery gene |
| GPY11_RS16940 | nadC | 2906459..2907364 (-) | 906 | WP_158161900.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPY11_RS16945 | ampD | 2907556..2908098 (+) | 543 | WP_158175125.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPY11_RS16950 | pdhR | 2908417..2909190 (+) | 774 | WP_005502094.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 14997.94 Da Isoelectric Point: 4.4857
>NTDB_id=408921 GPY11_RS16935 WP_158175124.1 2905794..2906231(-) (pilA) [Grimontia hollisae strain F9489]
MKKQQGFSLVELMIVVAVIGVLTAIALPAYQNFVKKSEAGAALATLNALKTNIEDHISSKGTFPDSTGTGLSDIGTAADA
FKYGTLETTPAAEADAPGGSVIITFGETGSTLTNTDKIALERDSDGQWACVTTNLDTQLKPKGCS
MKKQQGFSLVELMIVVAVIGVLTAIALPAYQNFVKKSEAGAALATLNALKTNIEDHISSKGTFPDSTGTGLSDIGTAADA
FKYGTLETTPAAEADAPGGSVIITFGETGSTLTNTDKIALERDSDGQWACVTTNLDTQLKPKGCS
Nucleotide
Download Length: 438 bp
>NTDB_id=408921 GPY11_RS16935 WP_158175124.1 2905794..2906231(-) (pilA) [Grimontia hollisae strain F9489]
ATGAAAAAGCAACAGGGTTTTAGTTTGGTTGAATTGATGATTGTGGTGGCTGTTATTGGCGTACTCACAGCAATCGCATT
ACCTGCGTACCAAAACTTCGTCAAAAAATCAGAGGCGGGTGCTGCGCTTGCAACACTTAACGCTCTGAAAACAAACATTG
AAGATCACATTTCAAGTAAAGGTACATTTCCTGATTCAACTGGTACCGGCTTATCAGACATTGGCACTGCAGCAGATGCA
TTTAAGTATGGAACACTTGAAACAACACCTGCAGCAGAGGCTGATGCCCCAGGAGGATCAGTAATAATTACCTTTGGTGA
AACCGGCTCCACTCTTACCAACACAGATAAAATTGCACTAGAGAGAGATTCTGATGGTCAGTGGGCATGTGTCACTACTA
ACCTAGACACTCAATTAAAACCGAAAGGTTGTTCGTAA
ATGAAAAAGCAACAGGGTTTTAGTTTGGTTGAATTGATGATTGTGGTGGCTGTTATTGGCGTACTCACAGCAATCGCATT
ACCTGCGTACCAAAACTTCGTCAAAAAATCAGAGGCGGGTGCTGCGCTTGCAACACTTAACGCTCTGAAAACAAACATTG
AAGATCACATTTCAAGTAAAGGTACATTTCCTGATTCAACTGGTACCGGCTTATCAGACATTGGCACTGCAGCAGATGCA
TTTAAGTATGGAACACTTGAAACAACACCTGCAGCAGAGGCTGATGCCCCAGGAGGATCAGTAATAATTACCTTTGGTGA
AACCGGCTCCACTCTTACCAACACAGATAAAATTGCACTAGAGAGAGATTCTGATGGTCAGTGGGCATGTGTCACTACTA
ACCTAGACACTCAATTAAAACCGAAAGGTTGTTCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae strain A1552 |
48.98 |
100 |
0.497 |
| pilA | Vibrio cholerae C6706 |
48.98 |
100 |
0.497 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.98 |
100 |
0.497 |
| pilA | Pseudomonas aeruginosa PAK |
44.872 |
100 |
0.483 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.781 |
100 |
0.421 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40.141 |
97.931 |
0.393 |
| pilA | Acinetobacter baumannii strain A118 |
39.041 |
100 |
0.393 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
38.889 |
99.31 |
0.386 |