Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | GPY11_RS16925 | Genome accession | NZ_CP046851 |
| Coordinates | 2902841..2904064 (-) | Length | 407 a.a. |
| NCBI ID | WP_114996181.1 | Uniprot ID | A0A377HK59 |
| Organism | Grimontia hollisae strain F9489 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2897841..2909064
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY11_RS16900 | mutT | 2899668..2900072 (+) | 405 | WP_005502113.1 | 8-oxo-dGTP diphosphatase MutT | - |
| GPY11_RS16905 | yacG | 2900275..2900472 (-) | 198 | WP_115660105.1 | DNA gyrase inhibitor YacG | - |
| GPY11_RS16910 | zapD | 2900507..2901247 (-) | 741 | WP_005502110.1 | cell division protein ZapD | - |
| GPY11_RS16915 | coaE | 2901237..2901860 (-) | 624 | WP_005502108.1 | dephospho-CoA kinase | - |
| GPY11_RS16920 | pilD | 2901864..2902733 (-) | 870 | WP_114996182.1 | prepilin peptidase | Machinery gene |
| GPY11_RS16925 | pilC | 2902841..2904064 (-) | 1224 | WP_114996181.1 | type II secretion system F family protein | Machinery gene |
| GPY11_RS16930 | pilB | 2904076..2905770 (-) | 1695 | WP_158175123.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPY11_RS16935 | pilA | 2905794..2906231 (-) | 438 | WP_158175124.1 | pilin | Machinery gene |
| GPY11_RS16940 | nadC | 2906459..2907364 (-) | 906 | WP_158161900.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPY11_RS16945 | ampD | 2907556..2908098 (+) | 543 | WP_158175125.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
Sequence
Protein
Download Length: 407 a.a. Molecular weight: 44980.87 Da Isoelectric Point: 10.0910
>NTDB_id=408919 GPY11_RS16925 WP_114996181.1 2902841..2904064(-) (pilC) [Grimontia hollisae strain F9489]
MATSSHKLFSYQWRGVTSKGAKVKGQTLAYSEQEARQALQEQRIRLDKIKKRSPSSWVRRKNAANAKDITLFSRQIATML
EAGVPLGETLRLLKASAKKAEMKFILGQIYSHIEAGSSLAQAMKTSSPLFDQFYCDLVATGEQTGHLEQIFARICVYREK
SEETKAKVIKAMIYPSIVCFLAILVTVGMLIFVIPTFKDVFSSFGAELPWFTRKVLGISDAIQLYGIYMLLALFIAVACV
RLGVTKSDKFRLRASRFSLQIPVIGDVLTKATISRFTRTLATTFSAGIPLLNGLSAAGKTANNTHYQRVIEEVHKQTSGG
RPLHRAIKETGQFPDMMIQMVMIGEESGALDDMLNKVAGIYEADVDNTVDNLGKILEPMIIVVLGVLIGSLVVAMYLPMF
NLMSVMG
MATSSHKLFSYQWRGVTSKGAKVKGQTLAYSEQEARQALQEQRIRLDKIKKRSPSSWVRRKNAANAKDITLFSRQIATML
EAGVPLGETLRLLKASAKKAEMKFILGQIYSHIEAGSSLAQAMKTSSPLFDQFYCDLVATGEQTGHLEQIFARICVYREK
SEETKAKVIKAMIYPSIVCFLAILVTVGMLIFVIPTFKDVFSSFGAELPWFTRKVLGISDAIQLYGIYMLLALFIAVACV
RLGVTKSDKFRLRASRFSLQIPVIGDVLTKATISRFTRTLATTFSAGIPLLNGLSAAGKTANNTHYQRVIEEVHKQTSGG
RPLHRAIKETGQFPDMMIQMVMIGEESGALDDMLNKVAGIYEADVDNTVDNLGKILEPMIIVVLGVLIGSLVVAMYLPMF
NLMSVMG
Nucleotide
Download Length: 1224 bp
>NTDB_id=408919 GPY11_RS16925 WP_114996181.1 2902841..2904064(-) (pilC) [Grimontia hollisae strain F9489]
ATGGCCACCAGTTCCCATAAACTTTTCTCTTACCAGTGGCGCGGTGTGACGTCGAAAGGCGCCAAAGTCAAAGGCCAGAC
ACTGGCATACTCCGAGCAGGAAGCCAGACAGGCACTGCAGGAGCAGCGGATACGGCTGGATAAAATCAAAAAGCGCTCGC
CCTCCTCCTGGGTACGGCGTAAAAATGCTGCCAACGCCAAAGACATTACCCTTTTCTCGCGCCAGATAGCGACCATGCTG
GAAGCGGGTGTGCCGCTGGGAGAAACCCTCAGGCTGCTGAAAGCCAGCGCCAAAAAAGCAGAAATGAAATTTATCCTCGG
CCAGATATACAGCCACATTGAAGCGGGTTCGTCACTGGCGCAGGCAATGAAAACCAGCTCGCCTCTTTTTGACCAGTTCT
ACTGCGATTTGGTGGCAACCGGTGAACAGACTGGGCACTTAGAACAGATTTTTGCCCGTATCTGTGTCTACCGGGAAAAA
AGTGAGGAAACCAAAGCCAAAGTCATCAAAGCGATGATATATCCATCTATTGTCTGTTTTCTCGCGATCCTTGTTACCGT
CGGCATGCTGATCTTCGTGATCCCAACATTCAAGGATGTCTTTTCATCGTTTGGGGCCGAACTGCCCTGGTTTACCCGTA
AAGTGCTGGGCATATCAGATGCTATCCAGCTTTACGGCATTTATATGCTGTTGGCCCTGTTTATCGCTGTAGCCTGTGTT
CGGCTTGGCGTCACCAAAAGCGATAAATTCCGGCTCAGGGCCAGCCGGTTTTCCCTGCAAATCCCGGTGATCGGAGACGT
GCTGACCAAAGCCACCATCTCCCGTTTTACCCGCACCCTGGCCACCACATTCAGTGCCGGTATTCCCTTACTCAATGGCT
TATCGGCGGCCGGTAAAACCGCCAACAACACCCACTACCAACGGGTAATCGAAGAGGTCCATAAACAGACATCCGGCGGC
CGTCCGCTCCACCGCGCCATCAAAGAAACCGGACAGTTTCCCGATATGATGATCCAGATGGTGATGATTGGTGAAGAGTC
CGGCGCCTTGGATGACATGCTGAACAAAGTCGCCGGCATCTATGAGGCTGATGTTGATAACACGGTCGACAACCTTGGCA
AAATCCTTGAGCCGATGATCATCGTTGTGCTCGGGGTGTTGATAGGTTCCCTGGTGGTTGCCATGTATCTGCCTATGTTC
AACCTGATGAGTGTTATGGGATAA
ATGGCCACCAGTTCCCATAAACTTTTCTCTTACCAGTGGCGCGGTGTGACGTCGAAAGGCGCCAAAGTCAAAGGCCAGAC
ACTGGCATACTCCGAGCAGGAAGCCAGACAGGCACTGCAGGAGCAGCGGATACGGCTGGATAAAATCAAAAAGCGCTCGC
CCTCCTCCTGGGTACGGCGTAAAAATGCTGCCAACGCCAAAGACATTACCCTTTTCTCGCGCCAGATAGCGACCATGCTG
GAAGCGGGTGTGCCGCTGGGAGAAACCCTCAGGCTGCTGAAAGCCAGCGCCAAAAAAGCAGAAATGAAATTTATCCTCGG
CCAGATATACAGCCACATTGAAGCGGGTTCGTCACTGGCGCAGGCAATGAAAACCAGCTCGCCTCTTTTTGACCAGTTCT
ACTGCGATTTGGTGGCAACCGGTGAACAGACTGGGCACTTAGAACAGATTTTTGCCCGTATCTGTGTCTACCGGGAAAAA
AGTGAGGAAACCAAAGCCAAAGTCATCAAAGCGATGATATATCCATCTATTGTCTGTTTTCTCGCGATCCTTGTTACCGT
CGGCATGCTGATCTTCGTGATCCCAACATTCAAGGATGTCTTTTCATCGTTTGGGGCCGAACTGCCCTGGTTTACCCGTA
AAGTGCTGGGCATATCAGATGCTATCCAGCTTTACGGCATTTATATGCTGTTGGCCCTGTTTATCGCTGTAGCCTGTGTT
CGGCTTGGCGTCACCAAAAGCGATAAATTCCGGCTCAGGGCCAGCCGGTTTTCCCTGCAAATCCCGGTGATCGGAGACGT
GCTGACCAAAGCCACCATCTCCCGTTTTACCCGCACCCTGGCCACCACATTCAGTGCCGGTATTCCCTTACTCAATGGCT
TATCGGCGGCCGGTAAAACCGCCAACAACACCCACTACCAACGGGTAATCGAAGAGGTCCATAAACAGACATCCGGCGGC
CGTCCGCTCCACCGCGCCATCAAAGAAACCGGACAGTTTCCCGATATGATGATCCAGATGGTGATGATTGGTGAAGAGTC
CGGCGCCTTGGATGACATGCTGAACAAAGTCGCCGGCATCTATGAGGCTGATGTTGATAACACGGTCGACAACCTTGGCA
AAATCCTTGAGCCGATGATCATCGTTGTGCTCGGGGTGTTGATAGGTTCCCTGGTGGTTGCCATGTATCTGCCTATGTTC
AACCTGATGAGTGTTATGGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Vibrio cholerae strain A1552 |
52.463 |
99.754 |
0.523 |
| pilC | Vibrio campbellii strain DS40M4 |
51.351 |
100 |
0.514 |
| pilC | Pseudomonas stutzeri DSM 10701 |
42.015 |
100 |
0.42 |
| pilC | Acinetobacter baumannii D1279779 |
40.704 |
97.789 |
0.398 |
| pilC | Acinetobacter baylyi ADP1 |
40 |
99.509 |
0.398 |
| pilG | Neisseria gonorrhoeae MS11 |
39.9 |
98.526 |
0.393 |
| pilC | Legionella pneumophila strain ERS1305867 |
38.614 |
99.263 |
0.383 |
| pilG | Neisseria meningitidis 44/76-A |
40.365 |
94.349 |
0.381 |