Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   GPY11_RS16920 Genome accession   NZ_CP046851
Coordinates   2901864..2902733 (-) Length   289 a.a.
NCBI ID   WP_114996182.1    Uniprot ID   -
Organism   Grimontia hollisae strain F9489     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2896864..2907733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY11_RS16900 mutT 2899668..2900072 (+) 405 WP_005502113.1 8-oxo-dGTP diphosphatase MutT -
  GPY11_RS16905 yacG 2900275..2900472 (-) 198 WP_115660105.1 DNA gyrase inhibitor YacG -
  GPY11_RS16910 zapD 2900507..2901247 (-) 741 WP_005502110.1 cell division protein ZapD -
  GPY11_RS16915 coaE 2901237..2901860 (-) 624 WP_005502108.1 dephospho-CoA kinase -
  GPY11_RS16920 pilD 2901864..2902733 (-) 870 WP_114996182.1 prepilin peptidase Machinery gene
  GPY11_RS16925 pilC 2902841..2904064 (-) 1224 WP_114996181.1 type II secretion system F family protein Machinery gene
  GPY11_RS16930 pilB 2904076..2905770 (-) 1695 WP_158175123.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GPY11_RS16935 pilA 2905794..2906231 (-) 438 WP_158175124.1 pilin Machinery gene
  GPY11_RS16940 nadC 2906459..2907364 (-) 906 WP_158161900.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31750.76 Da        Isoelectric Point: 5.6542

>NTDB_id=408918 GPY11_RS16920 WP_114996182.1 2901864..2902733(-) (pilD) [Grimontia hollisae strain F9489]
MDWLFDSPDLYVFLASLFGLIVGSFLNVVIYRLPKMMESQWRQECHACFPQEMPAPSESEVFNLSLPRSHCPSCHAPVRA
IDNIPVLSWLILGGKCRSCKTNISVRYPLIEILTAVLSGVVAYTLSGYWSLAVIGATFVLVVLCFIDLDTLLLPDQMTLP
LMWAGILLALTGLSPVSLQDAVIGAMAGYLSLWSVFQLFKLLTGKEGMGYGDFKLLAALGAWLGWQALPMVILMASMVGA
IGGIITMRVKGTGKETPFSFGPYLAIAGWISLLWGNMILDWYLTSYLGY

Nucleotide


Download         Length: 870 bp        

>NTDB_id=408918 GPY11_RS16920 WP_114996182.1 2901864..2902733(-) (pilD) [Grimontia hollisae strain F9489]
ATGGATTGGCTTTTCGACTCCCCGGATCTTTACGTTTTCCTTGCCTCACTGTTCGGCCTGATTGTGGGCAGCTTCCTCAA
TGTGGTTATCTATCGTTTACCCAAAATGATGGAGAGCCAGTGGCGACAGGAATGCCACGCCTGTTTTCCGCAAGAGATGC
CTGCGCCCAGTGAAAGTGAGGTATTCAACCTCAGCCTGCCGCGTTCTCACTGTCCGTCATGCCATGCGCCCGTCCGCGCG
ATTGACAACATTCCGGTATTAAGCTGGCTGATCCTTGGCGGCAAGTGCCGTTCCTGCAAAACCAACATCAGCGTCCGCTA
TCCCTTGATTGAAATTCTGACTGCCGTGCTGTCAGGTGTTGTGGCCTATACGCTGTCAGGGTATTGGTCACTCGCCGTGA
TTGGTGCCACTTTCGTGCTGGTTGTGCTCTGTTTTATCGACCTTGATACCCTGTTGCTGCCAGACCAGATGACACTGCCC
CTGATGTGGGCCGGTATTTTACTTGCGCTTACCGGTCTCTCCCCGGTTTCACTCCAGGATGCGGTGATCGGCGCGATGGC
GGGATACCTGTCACTGTGGAGCGTGTTCCAGCTGTTTAAGCTGCTGACGGGCAAGGAAGGGATGGGTTATGGCGATTTCA
AGCTCCTTGCAGCCCTTGGGGCCTGGCTGGGTTGGCAGGCATTGCCTATGGTTATTCTGATGGCGTCTATGGTTGGTGCG
ATTGGTGGCATCATCACAATGCGCGTGAAAGGCACAGGGAAAGAAACACCTTTTTCATTTGGCCCTTACCTGGCCATTGC
GGGCTGGATAAGTTTGCTGTGGGGCAATATGATCCTGGACTGGTATTTAACATCTTATCTGGGTTATTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(138-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

62.284

100

0.623
  pilD Vibrio campbellii strain DS40M4

63.83

97.578

0.623
  pilD Neisseria gonorrhoeae MS11

50.903

95.848

0.488
  pilD Acinetobacter nosocomialis M2

49.64

96.194

0.478
  pilD Acinetobacter baumannii D1279779

49.64

96.194

0.478

Multiple sequence alignment