Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GPY06_RS12380 Genome accession   NZ_CP046820
Coordinates   1435475..1436590 (-) Length   371 a.a.
NCBI ID   WP_095457496.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1015     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1430475..1441590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY06_RS12350 hemF 1431056..1431973 (-) 918 WP_158120141.1 oxygen-dependent coproporphyrinogen oxidase -
  GPY06_RS12355 - 1431992..1432549 (-) 558 WP_000527473.1 L-threonylcarbamoyladenylate synthase -
  GPY06_RS12360 purE 1432718..1433203 (+) 486 WP_158120142.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GPY06_RS12365 - 1433207..1434340 (+) 1134 WP_158120143.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GPY06_RS12370 - 1434414..1434980 (-) 567 WP_167517870.1 type I DNA topoisomerase -
  GPY06_RS12375 - 1434996..1435472 (-) 477 WP_000979765.1 DUF494 family protein -
  GPY06_RS12380 dprA 1435475..1436590 (-) 1116 WP_095457496.1 DNA-processing protein DprA Machinery gene
  GPY06_RS12385 - 1436590..1437717 (-) 1128 WP_167517871.1 LysM peptidoglycan-binding domain-containing protein -
  GPY06_RS12390 def 1437857..1438366 (+) 510 WP_000115005.1 peptide deformylase -
  GPY06_RS12395 fmt 1438384..1439331 (+) 948 WP_055034011.1 methionyl-tRNA formyltransferase -
  GPY06_RS12400 rsmB 1439386..1440666 (+) 1281 WP_158120146.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40181.25 Da        Isoelectric Point: 7.0649

>NTDB_id=408365 GPY06_RS12380 WP_095457496.1 1435475..1436590(-) (dprA) [Vibrio metoecus strain 2011V-1015]
MKDQDLAIWLALSFTPKLGSRTISHLLATQTPTQLQSLTPKQWLALGLKSEQLVYLTTEAAKQAEQCLQWRDGAKNRYIV
TPHCALYPRLLKEISVPPPVLFIEGLWEVLHDPAVAIVGSRDATIDGRQIARQFAGELAQSGLVVVSGLALGIDGHAHDG
ALQAQGQTVAVLGSGLTHIYPKQHQALAQRILTQGALVSEFAPFVPPKADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
ARYAAEQGREVFVVPGSIYNAASQGSNQLIRQGACLVQSVQQIHQELKNALTWSLSERVPYQPTLFSAPQGDEELPFPEL
LANVGVEATPIDILASRTHIPVQDVMMQLLELELLGHVVAVPGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=408365 GPY06_RS12380 WP_095457496.1 1435475..1436590(-) (dprA) [Vibrio metoecus strain 2011V-1015]
ATGAAGGATCAGGACTTAGCCATTTGGCTCGCGCTTAGCTTTACTCCCAAACTGGGTAGCAGGACGATTTCCCATCTCCT
TGCTACCCAAACGCCAACTCAGTTGCAAAGCCTGACACCTAAACAGTGGCTAGCACTTGGGCTCAAATCAGAACAATTGG
TGTATTTAACCACAGAAGCCGCCAAGCAAGCAGAACAGTGTTTGCAATGGCGGGATGGTGCGAAAAACCGCTACATAGTG
ACGCCGCATTGCGCGCTTTATCCCCGCTTATTAAAAGAAATTTCAGTTCCACCTCCAGTATTATTTATTGAAGGGTTATG
GGAGGTTTTACATGATCCCGCTGTTGCCATTGTCGGCAGCCGTGACGCTACGATTGATGGTCGGCAGATTGCGCGGCAGT
TTGCAGGTGAGCTAGCTCAATCAGGGTTAGTGGTGGTGAGTGGTCTTGCGCTGGGGATTGATGGACATGCCCATGATGGT
GCTTTGCAAGCGCAAGGGCAAACTGTGGCCGTGCTAGGCTCAGGCTTAACTCATATTTACCCCAAGCAGCATCAAGCGCT
GGCGCAGCGAATTCTCACGCAAGGTGCTTTGGTGTCGGAGTTTGCCCCTTTTGTCCCCCCTAAAGCGGATCATTTTCCAC
GGCGTAACCGGATCATCAGTGGGTTATCGTTGGGGGTGGTGGTGGTTGAAGCAGCGGAGAAGAGTGGATCTCTCATCACC
GCGCGTTATGCGGCAGAGCAGGGGCGTGAGGTTTTTGTTGTTCCCGGTTCGATTTACAATGCTGCTAGCCAGGGCAGTAA
TCAGTTAATTCGCCAAGGCGCCTGTTTAGTGCAAAGTGTGCAACAAATTCATCAAGAGCTCAAAAATGCGCTCACTTGGT
CACTCTCTGAGCGGGTACCTTACCAACCCACACTTTTTTCTGCTCCGCAGGGCGATGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGAGTAGAGGCTACACCTATTGATATTCTTGCAAGCCGGACCCATATACCGGTTCAAGATGTCATGAT
GCAGCTCTTGGAGCTTGAGCTCCTTGGGCATGTGGTTGCAGTACCTGGTGGCTATATTAGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-278)

DprA winged helix domain (DprA_WH)

(317-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

88.14

100

0.881
  dprA Vibrio campbellii strain DS40M4

58.108

99.73

0.58
  dprA Glaesserella parasuis strain SC1401

43.548

100

0.437
  dprA Legionella pneumophila strain ERS1305867

41.823

100

0.42
  dprA Haemophilus influenzae Rd KW20

45.373

90.296

0.41
  dprA Neisseria meningitidis MC58

37.376

100

0.407
  dprA Neisseria meningitidis strain C311

37.376

100

0.407
  dprA Neisseria gonorrhoeae strain FA1090

36.567

100

0.396
  dprA Acinetobacter baumannii D1279779

40.054

98.922

0.396
  dprA Acinetobacter baumannii strain A118

39.782

98.922

0.394
  dprA Neisseria gonorrhoeae MS11

36.318

100

0.394
  dprA Acinetobacter baylyi ADP1

38.919

99.73

0.388

Multiple sequence alignment