Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GPY47_RS15625 | Genome accession | NZ_CP046806 |
| Coordinates | 1621848..1622306 (+) | Length | 152 a.a. |
| NCBI ID | WP_047008977.1 | Uniprot ID | - |
| Organism | Vibrio alginolyticus strain 2439-01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1616848..1627306
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY47_RS15610 | pdhR | 1618882..1619649 (-) | 768 | WP_005379989.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| GPY47_RS15615 | ampD | 1620055..1620606 (-) | 552 | WP_042521337.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPY47_RS15620 | nadC | 1620699..1621586 (+) | 888 | WP_054576329.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPY47_RS15625 | pilA | 1621848..1622306 (+) | 459 | WP_047008977.1 | pilin | Machinery gene |
| GPY47_RS15630 | pilB | 1622312..1623997 (+) | 1686 | WP_054576330.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPY47_RS15635 | pilC | 1624021..1625244 (+) | 1224 | WP_158156851.1 | type II secretion system F family protein | Machinery gene |
| GPY47_RS15640 | pilD | 1625309..1626178 (+) | 870 | WP_158156853.1 | A24 family peptidase | Machinery gene |
| GPY47_RS15645 | coaE | 1626179..1626793 (+) | 615 | WP_064354292.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 15763.90 Da Isoelectric Point: 7.7818
>NTDB_id=408091 GPY47_RS15625 WP_047008977.1 1621848..1622306(+) (pilA) [Vibrio alginolyticus strain 2439-01]
MKNSKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQKYVAKSEVASALATLTGVKTNVEAYAVENGAFPDGSTANQTEAD
LGVPSTIPSGVIAFSTASSAGGTIKFTFNASGVSNLITSKNFELVRASDGTWTCQGSSASPVTDDLLPKNCR
MKNSKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQKYVAKSEVASALATLTGVKTNVEAYAVENGAFPDGSTANQTEAD
LGVPSTIPSGVIAFSTASSAGGTIKFTFNASGVSNLITSKNFELVRASDGTWTCQGSSASPVTDDLLPKNCR
Nucleotide
Download Length: 459 bp
>NTDB_id=408091 GPY47_RS15625 WP_047008977.1 1621848..1622306(+) (pilA) [Vibrio alginolyticus strain 2439-01]
ATGAAAAACAGTAAACAAAAAAAACAACAGGGTTTTACTCTGATCGAATTGATGATCGTGGTAGCAGTTATCGGTGTTTT
AGCAGCGATTGCAATTCCTCAATATCAAAAATATGTAGCGAAATCAGAAGTCGCATCCGCATTAGCTACATTAACTGGTG
TAAAAACTAACGTTGAAGCTTACGCTGTAGAAAATGGTGCTTTTCCGGATGGTTCAACAGCTAACCAAACAGAAGCAGAT
CTAGGTGTACCGAGCACAATCCCTTCAGGTGTTATCGCATTTTCAACTGCTAGTTCAGCTGGTGGCACTATCAAGTTCAC
GTTCAATGCCTCAGGCGTAAGTAACCTTATCACTAGCAAAAACTTTGAGTTGGTTCGTGCTTCTGATGGTACTTGGACAT
GTCAAGGCTCCTCAGCTAGCCCTGTTACAGACGATTTGTTACCAAAAAACTGTCGATAG
ATGAAAAACAGTAAACAAAAAAAACAACAGGGTTTTACTCTGATCGAATTGATGATCGTGGTAGCAGTTATCGGTGTTTT
AGCAGCGATTGCAATTCCTCAATATCAAAAATATGTAGCGAAATCAGAAGTCGCATCCGCATTAGCTACATTAACTGGTG
TAAAAACTAACGTTGAAGCTTACGCTGTAGAAAATGGTGCTTTTCCGGATGGTTCAACAGCTAACCAAACAGAAGCAGAT
CTAGGTGTACCGAGCACAATCCCTTCAGGTGTTATCGCATTTTCAACTGCTAGTTCAGCTGGTGGCACTATCAAGTTCAC
GTTCAATGCCTCAGGCGTAAGTAACCTTATCACTAGCAAAAACTTTGAGTTGGTTCGTGCTTCTGATGGTACTTGGACAT
GTCAAGGCTCCTCAGCTAGCCCTGTTACAGACGATTTGTTACCAAAAAACTGTCGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae strain A1552 |
48.077 |
100 |
0.493 |
| pilA | Vibrio cholerae C6706 |
48.077 |
100 |
0.493 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.077 |
100 |
0.493 |
| pilA | Acinetobacter baumannii strain A118 |
46.528 |
94.737 |
0.441 |
| pilA | Pseudomonas aeruginosa PAK |
43.791 |
100 |
0.441 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
47.059 |
89.474 |
0.421 |
| pilE | Neisseria gonorrhoeae MS11 |
34.783 |
100 |
0.368 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
37.671 |
96.053 |
0.362 |