Detailed information NTG0408094

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GPY47_RS15640
• Genome accession: NZ_CP046806
• Coordinates: 1625309..1626178 (+)
• Length: 289 a.a.
• NCBI ID: WP_158156853.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain 2439-01
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1620309..1631178

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY47_RS15620	nadC	1620699..1621586 (+)	888	WP_054576329.1	carboxylating nicotinate-nucleotide diphosphorylase	-
GPY47_RS15625	pilA	1621848..1622306 (+)	459	WP_047008977.1	pilin	Machinery gene
GPY47_RS15630	pilB	1622312..1623997 (+)	1686	WP_054576330.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GPY47_RS15635	pilC	1624021..1625244 (+)	1224	WP_158156851.1	type II secretion system F family protein	Machinery gene
GPY47_RS15640	pilD	1625309..1626178 (+)	870	WP_158156853.1	A24 family peptidase	Machinery gene
GPY47_RS15645	coaE	1626179..1626793 (+)	615	WP_064354292.1	dephospho-CoA kinase	-
GPY47_RS15650	zapD	1626821..1627561 (+)	741	WP_158156855.1	cell division protein ZapD	-
GPY47_RS15655	yacG	1627720..1627914 (+)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
GPY47_RS15660	rplS	1628398..1628751 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
GPY47_RS15665	trmD	1628793..1629554 (-)	762	WP_064354293.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
GPY47_RS15670	rimM	1629582..1630130 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
GPY47_RS15675	rpsP	1630160..1630408 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32567.75 Da
• Isoelectric Point: 7.0197

>NTDB_id=408094 GPY47_RS15640 WP_158156853.1 1625309..1626178(+) (pilD) [Vibrio alginolyticus strain 2439-01]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCTTPIRIR
DNIPVISWLLLKGKCHNCQTAISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGEQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=408094 GPY47_RS15640 WP_158156853.1 1625309..1626178(+) (pilD) [Vibrio alginolyticus strain 2439-01]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCACAACGCCGATACGTATTCGA
GACAACATCCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGCCACAACTGTCAGACAGCCATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTTTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTAGATACGATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAGGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGAGCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.003	100	0.91
pilD	Vibrio cholerae strain A1552	72.569	99.654	0.723
pilD	Acinetobacter baumannii D1279779	51.812	95.502	0.495
pilD	Acinetobacter nosocomialis M2	51.852	93.426	0.484
pilD	Neisseria gonorrhoeae MS11	48.188	95.502	0.46