Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GPY47_RS15635 Genome accession   NZ_CP046806
Coordinates   1624021..1625244 (+) Length   407 a.a.
NCBI ID   WP_158156851.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2439-01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1619021..1630244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY47_RS15615 ampD 1620055..1620606 (-) 552 WP_042521337.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GPY47_RS15620 nadC 1620699..1621586 (+) 888 WP_054576329.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GPY47_RS15625 pilA 1621848..1622306 (+) 459 WP_047008977.1 pilin Machinery gene
  GPY47_RS15630 pilB 1622312..1623997 (+) 1686 WP_054576330.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GPY47_RS15635 pilC 1624021..1625244 (+) 1224 WP_158156851.1 type II secretion system F family protein Machinery gene
  GPY47_RS15640 pilD 1625309..1626178 (+) 870 WP_158156853.1 A24 family peptidase Machinery gene
  GPY47_RS15645 coaE 1626179..1626793 (+) 615 WP_064354292.1 dephospho-CoA kinase -
  GPY47_RS15650 zapD 1626821..1627561 (+) 741 WP_158156855.1 cell division protein ZapD -
  GPY47_RS15655 yacG 1627720..1627914 (+) 195 WP_017635922.1 DNA gyrase inhibitor YacG -
  GPY47_RS15660 rplS 1628398..1628751 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  GPY47_RS15665 trmD 1628793..1629554 (-) 762 WP_064354293.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  GPY47_RS15670 rimM 1629582..1630130 (-) 549 WP_005379964.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45312.51 Da        Isoelectric Point: 10.4523

>NTDB_id=408093 GPY47_RS15635 WP_158156851.1 1624021..1625244(+) (pilC) [Vibrio alginolyticus strain 2439-01]
MKSTTPQLKNFRWKGINSSGKKTSGQTLAMTEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGRDITVFTRQISTML
ITGVPLVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RILSKRSDSFRLMLNRSVLKFPVLGPVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDNMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=408093 GPY47_RS15635 WP_158156851.1 1624021..1625244(+) (pilC) [Vibrio alginolyticus strain 2439-01]
ATGAAAAGCACTACACCACAACTTAAAAACTTCCGCTGGAAAGGCATCAACAGTTCAGGCAAAAAGACGTCTGGACAAAC
CCTCGCGATGACAGAAATTGAAGTACGCGAGCGTCTAGACGCACAGCACATCAAGATCAAGAAGTTAAAGAAAAGCAGTA
TCTCGTTTCTCACTAAACTCAGCCATCGCGTGAAAGGCAGAGACATCACGGTGTTTACCCGTCAGATTTCGACGATGTTG
ATAACCGGTGTACCCTTAGTTCAGGCTTTAAAATTGGTCTCAGAAAATCATAAAAAAGCAGAGATGAAATCCATTTTGAT
GAGCGTGACACGCGCCGTTGAAGCGGGGACGCCCATGTCAAAAGCAATGCGCACTGCAAGTGAACACTTTGACCCACTCT
ATACCGACCTTATCGCAACAGGTGAGCAATCCGGTAACTTAGCGGAAGTGTTCGAGCGCTTAGCCACCTACCGAGAAAAA
AATGAGCAGCTTCGTGCGAAAGTGATCAAAGCACTGATTTACCCAGCCATGGTAGTGCTAGTAGCGTTAGGAGTGTCGTT
TATCATGCTCACCAAAGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGTTTTGGTGCTGACTTACCGTGGTTTACCAGGC
AAGTGTTAGATCTTTCCGCCTGGACACAAAACTGGAGCCCATTTATAGCACTAGGCTCTATCAGTCTATTCATCTCAGCG
AGAATCCTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAATCGCTCTGTGCTTAAATTTCCTGTCCTCGGGCCCGT
ATTATCAAAAGCCGCTATCGCCAAATTTAGTCGAACACTCGCCACAAGCTTTACAGCGGGTATTCCAATTCTAACCAGTT
TAAAAACCACATCAAAAACCTCAGGAAACTTACACTATCAACTCGCCATAGAAGAAGTGTACCGTGATACCGCCGCAGGT
ATGCCAATGTATGTTGCCATGCGTAACTGTAATGTGTTCCCTGAATTAGTGTTACAAATGGTCATGATCGGTGAAGAGTC
TGGTCGACTTGACAATATGCTCAATAAAGTTGCAACGATCTACGAGTTTGAAGTCGATAACACCGTCGACAACCTTAGTA
AAATTCTAGAGCCGCTAATTATCGTTTTTTTAGGCATCGTTGTTGGCGGATTAGTGACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

86.978

100

0.87
  pilC Vibrio cholerae strain A1552

73.529

100

0.737
  pilC Acinetobacter baylyi ADP1

42.75

98.28

0.42
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilC Legionella pneumophila strain ERS1305867

40.295

100

0.403
  pilG Neisseria gonorrhoeae MS11

40.247

99.509

0.4
  pilG Neisseria meningitidis 44/76-A

40

99.509

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398

Multiple sequence alignment