Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GPX92_RS08700 Genome accession   NZ_CP046802
Coordinates   939914..941038 (-) Length   374 a.a.
NCBI ID   WP_158117027.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 2070-81     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 934914..946038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX92_RS08670 hemF 935496..936410 (-) 915 WP_167514877.1 oxygen-dependent coproporphyrinogen oxidase -
  GPX92_RS08675 - 936433..936990 (-) 558 WP_158117025.1 L-threonylcarbamoyladenylate synthase -
  GPX92_RS08680 purE 937188..937673 (+) 486 WP_078927456.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GPX92_RS08685 - 937677..938804 (+) 1128 WP_158117026.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GPX92_RS08690 - 938869..939438 (-) 570 WP_078927458.1 type I DNA topoisomerase -
  GPX92_RS08695 - 939444..939917 (-) 474 WP_078927459.1 DUF494 family protein -
  GPX92_RS08700 dprA 939914..941038 (-) 1125 WP_158117027.1 DNA-processing protein DprA Machinery gene
  GPX92_RS08705 - 941057..942166 (-) 1110 WP_420883056.1 LysM peptidoglycan-binding domain-containing protein -
  GPX92_RS08710 def 942306..942818 (+) 513 WP_206752144.1 peptide deformylase -
  GPX92_RS08715 fmt 942838..943785 (+) 948 WP_078927462.1 methionyl-tRNA formyltransferase -
  GPX92_RS08720 rsmB 943842..945125 (+) 1284 WP_154115063.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 41189.29 Da        Isoelectric Point: 6.3413

>NTDB_id=408051 GPX92_RS08700 WP_158117027.1 939914..941038(-) (dprA) [Vibrio cincinnatiensis strain 2070-81]
MQHKDLCAWLALSFTPKLTQKMITRLLSLDSLANMFDYSSQQWLALGLKPDQVDYLMHQAKREVEACLEWQSKEAGRHII
ALYDDSRYPPLLREVASPPKVLFVEGRCSTLVNPQIAIVGSRDATIDSRYIAQHFASQLVEHDLTVTSGLALGIDGYAHD
GALKASGSTIAVLGSGLECIYPTRHQSLAERIKADGALVSEFRPNTKPRPEYFPRRNRIISGLSLGVLVVEAAEKSGSLI
TARYALEQGRDVFVIPGPIHITNFQGSNRLIQQGACLVQTVDDILAEITLLTHWSQKSAISTQEDLFSPSNGQEELPFPE
LLANVGVEATPVDILAQRTHIPVQEVMMQLLELELLGQVVAVSGGYIRKGRGKL

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=408051 GPX92_RS08700 WP_158117027.1 939914..941038(-) (dprA) [Vibrio cincinnatiensis strain 2070-81]
ATGCAACACAAAGATCTCTGTGCTTGGCTCGCTTTAAGCTTTACACCGAAGCTAACGCAGAAGATGATTACGCGATTGTT
GAGCTTAGACTCTCTGGCAAACATGTTCGATTATTCCTCTCAGCAGTGGTTAGCTTTAGGACTGAAGCCAGATCAAGTGG
ATTATTTGATGCATCAGGCTAAGCGAGAGGTTGAAGCTTGTTTAGAGTGGCAATCGAAAGAGGCTGGGCGACATATTATT
GCTCTGTATGATGATTCTCGCTATCCCCCTTTATTGCGTGAGGTCGCATCTCCACCGAAAGTCTTGTTTGTAGAAGGGCG
ATGTTCGACTCTTGTGAACCCACAAATTGCGATTGTCGGTAGTCGAGATGCAACGATAGATAGTCGGTACATTGCCCAAC
ATTTTGCTTCGCAATTAGTGGAACATGACCTCACGGTTACCAGTGGGCTTGCTCTAGGAATTGACGGTTATGCGCACGAT
GGGGCTCTAAAAGCGTCAGGGTCAACCATTGCGGTTTTAGGTTCGGGGCTCGAATGTATTTATCCGACGAGGCATCAATC
CTTAGCTGAGCGAATAAAAGCCGATGGAGCTTTAGTCTCTGAATTTCGTCCTAATACAAAACCAAGGCCAGAATATTTCC
CGCGGCGTAACCGTATTATTAGTGGCTTATCATTAGGGGTCTTAGTGGTTGAAGCCGCTGAAAAAAGCGGTTCACTGATT
ACTGCTCGCTATGCTTTGGAGCAAGGACGAGACGTTTTTGTGATTCCAGGCCCAATACATATCACCAATTTTCAGGGGAG
TAACCGTCTTATTCAGCAGGGAGCTTGTCTTGTTCAAACGGTGGACGATATTCTCGCTGAAATCACTTTGCTGACTCATT
GGTCACAAAAATCTGCCATTTCCACTCAAGAAGACCTTTTTTCTCCATCAAATGGTCAAGAAGAATTGCCATTTCCCGAG
CTGTTAGCTAACGTAGGAGTAGAAGCGACACCCGTTGATATTCTTGCACAGCGGACCCATATCCCTGTACAAGAAGTCAT
GATGCAGCTCTTAGAGCTTGAGCTTTTAGGGCAAGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCAAGC
TATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-279)

DprA winged helix domain (DprA_WH)

(320-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

62.228

98.396

0.612
  dprA Vibrio cholerae strain A1552

61.29

99.465

0.61
  dprA Glaesserella parasuis strain SC1401

43.767

100

0.441
  dprA Haemophilus influenzae Rd KW20

44.478

89.572

0.398
  dprA Legionella pneumophila strain ERS1305867

44.785

87.166

0.39
  dprA Neisseria meningitidis MC58

36.591

100

0.39
  dprA Neisseria meningitidis strain C311

36.591

100

0.39
  dprA Neisseria gonorrhoeae MS11

35.088

100

0.374
  dprA Neisseria gonorrhoeae strain FA1090

34.837

100

0.372
  dprA Acinetobacter baumannii D1279779

41.212

88.235

0.364
  dprA Acinetobacter baumannii strain A118

40.663

88.77

0.361
  dprA Acinetobacter baylyi ADP1

40.419

89.305

0.361

Multiple sequence alignment