Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | PSEFU_RS18975 | Genome accession | NC_015556 |
| Coordinates | 4093588..4094811 (+) | Length | 407 a.a. |
| NCBI ID | WP_013792871.1 | Uniprot ID | F6AGH7 |
| Organism | Pseudomonas fulva 12-X | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4088588..4099811
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSEFU_RS18960 (Psefu_3789) | - | 4089213..4091171 (-) | 1959 | WP_013792868.1 | tetratricopeptide repeat protein | - |
| PSEFU_RS22965 (Psefu_3790) | pilA | 4091196..4091612 (-) | 417 | WP_420042201.1 | pilin | Machinery gene |
| PSEFU_RS18970 (Psefu_3791) | pilB | 4091885..4093585 (+) | 1701 | WP_013792870.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PSEFU_RS18975 (Psefu_3792) | pilC | 4093588..4094811 (+) | 1224 | WP_013792871.1 | type II secretion system F family protein | Machinery gene |
| PSEFU_RS18980 (Psefu_3793) | pilD | 4094815..4095687 (+) | 873 | WP_013792872.1 | prepilin peptidase | Machinery gene |
| PSEFU_RS18985 (Psefu_3794) | coaE | 4095804..4096412 (+) | 609 | WP_013792873.1 | dephospho-CoA kinase | - |
| PSEFU_RS18990 (Psefu_3795) | yacG | 4096409..4096609 (+) | 201 | WP_013792874.1 | DNA gyrase inhibitor YacG | - |
| PSEFU_RS18995 (Psefu_3796) | - | 4096649..4097176 (+) | 528 | WP_013792875.1 | MOSC domain-containing protein | - |
| PSEFU_RS19000 (Psefu_3797) | - | 4097408..4098706 (+) | 1299 | WP_013792876.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 407 a.a. Molecular weight: 43803.52 Da Isoelectric Point: 9.9660
>NTDB_id=40777 PSEFU_RS18975 WP_013792871.1 4093588..4094811(+) (pilC) [Pseudomonas fulva 12-X]
MAAATKAPKTSTFVWEGKDRKGSIVKGELSGQNPALVKAQLRKQGINPTKVRKKGMSLGGTGKKIKPLDIALFARQMATM
MKAGVPLLQSFDIIADGVEKPAMRKLVDELKQHVAAGNSFAAALRTKPQYFDDLFCNLVDAGEQSGALESLLDRVATYKE
KTEALKAKIKKAMNYPIAVIAVAIIVSCILLIKVVPQFKEVFSSFGAELPAFTLFVIGISEGLQEWWFIFLIALIGAGYA
FMQAKQRSEKFRDALDRTILKAPIVGNIVYKAAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRNAVAKVKQDVTS
GMQLNFSMRTTNAFPAMAVQMTAIGEESGALDSMLDKVASYYEAEVDNAVDGLTSLMEPLIMSVLGVLVGGLIIAMYLPI
FQLGSVV
MAAATKAPKTSTFVWEGKDRKGSIVKGELSGQNPALVKAQLRKQGINPTKVRKKGMSLGGTGKKIKPLDIALFARQMATM
MKAGVPLLQSFDIIADGVEKPAMRKLVDELKQHVAAGNSFAAALRTKPQYFDDLFCNLVDAGEQSGALESLLDRVATYKE
KTEALKAKIKKAMNYPIAVIAVAIIVSCILLIKVVPQFKEVFSSFGAELPAFTLFVIGISEGLQEWWFIFLIALIGAGYA
FMQAKQRSEKFRDALDRTILKAPIVGNIVYKAAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRNAVAKVKQDVTS
GMQLNFSMRTTNAFPAMAVQMTAIGEESGALDSMLDKVASYYEAEVDNAVDGLTSLMEPLIMSVLGVLVGGLIIAMYLPI
FQLGSVV
Nucleotide
Download Length: 1224 bp
>NTDB_id=40777 PSEFU_RS18975 WP_013792871.1 4093588..4094811(+) (pilC) [Pseudomonas fulva 12-X]
ATGGCAGCAGCAACAAAAGCGCCCAAGACCAGCACCTTCGTCTGGGAAGGCAAAGATCGCAAGGGCAGCATCGTCAAGGG
CGAGCTCAGCGGCCAGAACCCGGCACTGGTCAAAGCGCAATTGCGCAAACAAGGCATCAATCCGACAAAGGTGCGCAAGA
AAGGCATGAGCCTGGGCGGCACCGGCAAAAAGATCAAACCGCTGGATATCGCCCTGTTTGCCCGCCAGATGGCCACCATG
ATGAAGGCTGGCGTCCCGCTGCTGCAGTCGTTCGACATCATCGCTGACGGAGTGGAAAAGCCCGCTATGCGCAAGCTGGT
GGACGAGCTCAAACAACACGTGGCGGCAGGTAACAGCTTTGCTGCCGCGCTACGCACCAAGCCTCAGTATTTCGACGATC
TGTTCTGCAACCTGGTTGATGCGGGTGAGCAATCTGGTGCACTGGAGAGCCTCCTTGACCGAGTGGCTACCTATAAAGAG
AAAACCGAAGCACTGAAGGCCAAAATCAAGAAAGCCATGAACTATCCGATTGCCGTTATCGCGGTGGCAATCATTGTTTC
GTGTATCTTGCTTATTAAGGTGGTGCCGCAGTTCAAAGAGGTCTTCTCCAGTTTTGGCGCCGAGCTGCCGGCCTTTACGC
TCTTTGTTATTGGTATATCCGAAGGGCTGCAGGAATGGTGGTTCATCTTCTTGATTGCCCTGATTGGAGCAGGCTACGCC
TTCATGCAGGCCAAGCAACGTTCGGAAAAATTCCGTGATGCCTTGGATCGCACCATTCTCAAGGCTCCCATCGTAGGCAA
TATCGTCTACAAAGCTGCGGTTGCTCGTTATGCGCGCACGCTATCGACAACCTTCGCAGCCGGTGTTCCTCTTGTCGAAG
CGCTCGACTCCGTTTCTGGTGCGACCGGCAACGTGGTTTTCCGCAATGCTGTTGCCAAGGTAAAGCAGGATGTCACCAGC
GGTATGCAGTTGAACTTTTCCATGCGCACGACTAATGCCTTCCCAGCCATGGCCGTTCAAATGACCGCTATTGGTGAGGA
GTCCGGGGCGCTGGACTCCATGCTCGATAAAGTGGCGAGCTACTACGAGGCCGAAGTGGATAACGCGGTAGATGGCCTCA
CTTCGCTAATGGAGCCCTTGATCATGTCCGTCCTTGGCGTTCTGGTGGGCGGCCTGATCATTGCGATGTACCTGCCGATC
TTCCAGCTCGGCTCCGTTGTCTAG
ATGGCAGCAGCAACAAAAGCGCCCAAGACCAGCACCTTCGTCTGGGAAGGCAAAGATCGCAAGGGCAGCATCGTCAAGGG
CGAGCTCAGCGGCCAGAACCCGGCACTGGTCAAAGCGCAATTGCGCAAACAAGGCATCAATCCGACAAAGGTGCGCAAGA
AAGGCATGAGCCTGGGCGGCACCGGCAAAAAGATCAAACCGCTGGATATCGCCCTGTTTGCCCGCCAGATGGCCACCATG
ATGAAGGCTGGCGTCCCGCTGCTGCAGTCGTTCGACATCATCGCTGACGGAGTGGAAAAGCCCGCTATGCGCAAGCTGGT
GGACGAGCTCAAACAACACGTGGCGGCAGGTAACAGCTTTGCTGCCGCGCTACGCACCAAGCCTCAGTATTTCGACGATC
TGTTCTGCAACCTGGTTGATGCGGGTGAGCAATCTGGTGCACTGGAGAGCCTCCTTGACCGAGTGGCTACCTATAAAGAG
AAAACCGAAGCACTGAAGGCCAAAATCAAGAAAGCCATGAACTATCCGATTGCCGTTATCGCGGTGGCAATCATTGTTTC
GTGTATCTTGCTTATTAAGGTGGTGCCGCAGTTCAAAGAGGTCTTCTCCAGTTTTGGCGCCGAGCTGCCGGCCTTTACGC
TCTTTGTTATTGGTATATCCGAAGGGCTGCAGGAATGGTGGTTCATCTTCTTGATTGCCCTGATTGGAGCAGGCTACGCC
TTCATGCAGGCCAAGCAACGTTCGGAAAAATTCCGTGATGCCTTGGATCGCACCATTCTCAAGGCTCCCATCGTAGGCAA
TATCGTCTACAAAGCTGCGGTTGCTCGTTATGCGCGCACGCTATCGACAACCTTCGCAGCCGGTGTTCCTCTTGTCGAAG
CGCTCGACTCCGTTTCTGGTGCGACCGGCAACGTGGTTTTCCGCAATGCTGTTGCCAAGGTAAAGCAGGATGTCACCAGC
GGTATGCAGTTGAACTTTTCCATGCGCACGACTAATGCCTTCCCAGCCATGGCCGTTCAAATGACCGCTATTGGTGAGGA
GTCCGGGGCGCTGGACTCCATGCTCGATAAAGTGGCGAGCTACTACGAGGCCGAAGTGGATAACGCGGTAGATGGCCTCA
CTTCGCTAATGGAGCCCTTGATCATGTCCGTCCTTGGCGTTCTGGTGGGCGGCCTGATCATTGCGATGTACCTGCCGATC
TTCCAGCTCGGCTCCGTTGTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
77.228 |
99.263 |
0.767 |
| pilC | Acinetobacter baylyi ADP1 |
62.99 |
100 |
0.631 |
| pilC | Acinetobacter baumannii D1279779 |
62.162 |
100 |
0.622 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.605 |
99.017 |
0.521 |
| pilG | Neisseria gonorrhoeae MS11 |
45.025 |
98.771 |
0.445 |
| pilG | Neisseria meningitidis 44/76-A |
45.025 |
98.771 |
0.445 |
| pilC | Vibrio cholerae strain A1552 |
40.988 |
99.509 |
0.408 |
| pilC | Vibrio campbellii strain DS40M4 |
40.786 |
100 |
0.408 |
| pilC | Thermus thermophilus HB27 |
36.816 |
98.771 |
0.364 |