Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   PSEFU_RS18980 Genome accession   NC_015556
Coordinates   4094815..4095687 (+) Length   290 a.a.
NCBI ID   WP_013792872.1    Uniprot ID   F6AGH8
Organism   Pseudomonas fulva 12-X     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4089815..4100687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSEFU_RS22965 (Psefu_3790) pilA 4091196..4091612 (-) 417 WP_420042201.1 pilin Machinery gene
  PSEFU_RS18970 (Psefu_3791) pilB 4091885..4093585 (+) 1701 WP_013792870.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PSEFU_RS18975 (Psefu_3792) pilC 4093588..4094811 (+) 1224 WP_013792871.1 type II secretion system F family protein Machinery gene
  PSEFU_RS18980 (Psefu_3793) pilD 4094815..4095687 (+) 873 WP_013792872.1 prepilin peptidase Machinery gene
  PSEFU_RS18985 (Psefu_3794) coaE 4095804..4096412 (+) 609 WP_013792873.1 dephospho-CoA kinase -
  PSEFU_RS18990 (Psefu_3795) yacG 4096409..4096609 (+) 201 WP_013792874.1 DNA gyrase inhibitor YacG -
  PSEFU_RS18995 (Psefu_3796) - 4096649..4097176 (+) 528 WP_013792875.1 MOSC domain-containing protein -
  PSEFU_RS19000 (Psefu_3797) - 4097408..4098706 (+) 1299 WP_013792876.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 31949.93 Da        Isoelectric Point: 6.9297

>NTDB_id=40778 PSEFU_RS18980 WP_013792872.1 4094815..4095687(+) (pilD) [Pseudomonas fulva 12-X]
MTIYDFLAGNTPAFVFCALLIGLLVGSFLNVVIHRLPKMMLRDWRIQARELLELPAEPAGETYNLVLPNSSCPHCQHEIR
PWENIPVVSYVFLRGKCSGCQAKISLRYPLVELSCGLISAYIAWHFGFGWQAVGMLVLAWGLLAMSLIDADHQLLPDVLV
LPLLWLGLITNNFGLFTSLEDALWGAVAGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSVVG
AVLGVIMLRLRDASTSTPIPFGPYLAIAGFIALLWGKQITAGYLQFAGFN

Nucleotide


Download         Length: 873 bp        

>NTDB_id=40778 PSEFU_RS18980 WP_013792872.1 4094815..4095687(+) (pilD) [Pseudomonas fulva 12-X]
ATGACCATATATGACTTCTTGGCCGGCAATACACCGGCCTTTGTTTTCTGCGCACTTCTAATCGGCCTACTGGTTGGCAG
CTTCCTCAACGTGGTGATTCATCGCCTGCCGAAGATGATGTTGCGCGACTGGCGCATCCAAGCGCGGGAACTGCTGGAGC
TGCCCGCCGAGCCGGCAGGCGAAACCTACAATCTGGTGCTGCCCAACTCCAGCTGCCCCCACTGCCAACATGAAATCCGC
CCTTGGGAAAACATCCCAGTGGTCAGCTATGTGTTTCTGCGCGGCAAATGCTCTGGCTGCCAGGCAAAGATCAGCCTGCG
TTATCCACTGGTCGAGCTGAGCTGCGGCCTTATCTCGGCCTATATCGCCTGGCATTTTGGATTTGGCTGGCAAGCAGTAG
GCATGCTGGTGCTTGCCTGGGGTCTCCTGGCGATGAGCCTGATCGATGCCGATCACCAGCTGCTGCCAGACGTGCTGGTG
TTGCCGCTGCTGTGGCTGGGTTTGATCACCAACAATTTTGGGCTGTTTACCAGCCTGGAAGACGCCTTGTGGGGCGCCGT
CGCGGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGAAGGAATGGGATATGGCGACT
TCAAGCTGCTCGCCATGCTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCACTGACCATTCTGCTATCTTCGGTGGTCGGT
GCCGTGCTCGGGGTGATCATGCTGCGCTTACGCGATGCCAGCACCAGTACGCCGATTCCCTTTGGCCCTTATCTGGCCAT
TGCAGGCTTTATCGCGCTGCTGTGGGGCAAGCAGATTACCGCGGGTTACTTGCAATTCGCAGGTTTCAACTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)

Type IV leader peptidase family (Peptidase_A24)

(136-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F6AGH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

56.25

93.793

0.528
  pilD Vibrio campbellii strain DS40M4

54.945

94.138

0.517
  pilD Acinetobacter baumannii D1279779

51.056

97.931

0.5
  pilD Acinetobacter nosocomialis M2

50

97.931

0.49
  pilD Neisseria gonorrhoeae MS11

50

90.345

0.452

Multiple sequence alignment