Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GPY20_RS10040 Genome accession   NZ_CP046756
Coordinates   655202..656317 (-) Length   371 a.a.
NCBI ID   WP_020332566.1    Uniprot ID   S7J652
Organism   Vibrio fluvialis strain 2015AW-0077     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 650202..661317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY20_RS10010 hemF 650760..651674 (-) 915 WP_158129874.1 oxygen-dependent coproporphyrinogen oxidase -
  GPY20_RS10015 - 651694..652251 (-) 558 WP_014204147.1 L-threonylcarbamoyladenylate synthase -
  GPY20_RS10020 purE 652449..652934 (+) 486 WP_061057039.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GPY20_RS10025 - 652938..654071 (+) 1134 WP_158129875.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GPY20_RS10030 - 654105..654692 (-) 588 WP_020332564.1 type I DNA topoisomerase -
  GPY20_RS10035 - 654723..655199 (-) 477 WP_020332565.1 DUF494 family protein -
  GPY20_RS10040 dprA 655202..656317 (-) 1116 WP_020332566.1 DNA-processing protein DprA Machinery gene
  GPY20_RS10045 - 656317..657435 (-) 1119 WP_158129876.1 LysM peptidoglycan-binding domain-containing protein -
  GPY20_RS10050 def 657575..658087 (+) 513 WP_020332568.1 peptide deformylase -
  GPY20_RS10055 fmt 658106..659053 (+) 948 WP_158129877.1 methionyl-tRNA formyltransferase -
  GPY20_RS10060 rsmB 659104..660384 (+) 1281 WP_158129878.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40529.98 Da        Isoelectric Point: 6.2298

>NTDB_id=407230 GPY20_RS10040 WP_020332566.1 655202..656317(-) (dprA) [Vibrio fluvialis strain 2015AW-0077]
MLERDLAAWLAFSFTPQLGIRTLQRLASRYALSDLKQHLNRDGLAVGLKDNQIQYLQRQADQDVDACLRWSDQADNRHIL
TPFHAHYPSLLTEIAAAPPVLFVEGRLEALRAPQIAIVGSRNASIDSQQIAHQFATQLVEHGLVVTSGLALGIDGYAHDG
ALKAGGETIAVLGSGLECIYPARHRALAGRIVDRGALVSEFRPDAKPRPDHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQSREVFVVPGSIRNPNSLGSNQLIRQGACLVQHVDHILEEVSSLMDWSRNQSQPEQTELFSGTYNEEELPFPEL
LANVGGEATPVDILANRTNIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=407230 GPY20_RS10040 WP_020332566.1 655202..656317(-) (dprA) [Vibrio fluvialis strain 2015AW-0077]
ATGCTCGAACGCGATCTGGCTGCTTGGCTGGCTTTCAGTTTTACTCCTCAACTCGGTATCCGAACACTGCAGCGTTTAGC
TAGTCGTTACGCGCTGTCTGACCTCAAACAACACCTGAATCGTGACGGCTTGGCCGTAGGGCTGAAAGACAACCAGATTC
AGTATTTGCAGCGGCAGGCCGATCAAGACGTCGATGCCTGCCTGCGTTGGAGTGATCAGGCTGATAATCGCCATATTCTG
ACGCCGTTTCATGCGCACTATCCCTCGTTATTGACCGAAATCGCCGCCGCTCCGCCAGTGCTGTTTGTGGAGGGGCGGCT
TGAAGCGCTGCGTGCGCCGCAAATTGCTATTGTCGGCAGTCGCAACGCCAGTATCGACAGTCAGCAAATCGCTCATCAAT
TTGCCACGCAATTGGTCGAACACGGCTTGGTGGTCACCAGTGGTCTGGCGCTTGGTATTGATGGCTACGCGCATGATGGC
GCACTCAAAGCGGGTGGGGAAACTATTGCGGTGCTGGGCTCGGGGCTGGAATGTATTTATCCGGCTCGCCATCGCGCGTT
GGCGGGGCGTATTGTTGACAGAGGCGCCTTGGTGTCGGAATTTCGCCCTGATGCCAAGCCTCGACCTGATCATTTTCCGC
GTCGTAATCGTATTATCAGTGGGTTGTCATTGGGCGTTCTGGTGGTGGAAGCGGCGGAAAAAAGTGGCTCGCTCATCACC
GCGCGTTATGCCGCCGAACAGAGCCGAGAGGTGTTTGTCGTGCCGGGCTCAATTCGCAACCCGAATAGCCTCGGCAGTAA
CCAGTTGATTCGACAAGGGGCGTGTTTGGTACAACATGTCGATCATATTCTCGAAGAAGTCAGCAGTTTGATGGACTGGA
GCCGAAATCAGTCACAACCTGAGCAGACAGAACTTTTTTCTGGCACATATAACGAAGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGGGGAGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGATGTCATGAT
GCAGCTCCTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7J652

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

64.69

100

0.647
  dprA Vibrio campbellii strain DS40M4

64.85

98.922

0.642
  dprA Glaesserella parasuis strain SC1401

45.699

100

0.458
  dprA Legionella pneumophila strain ERS1305867

43.407

98.113

0.426
  dprA Neisseria meningitidis MC58

37.437

100

0.402
  dprA Neisseria meningitidis strain C311

37.437

100

0.402
  dprA Haemophilus influenzae Rd KW20

44.012

90.027

0.396
  dprA Acinetobacter baumannii strain A118

42.229

91.914

0.388
  dprA Neisseria gonorrhoeae MS11

35.93

100

0.385
  dprA Acinetobacter baumannii D1279779

42.183

91.375

0.385
  dprA Neisseria gonorrhoeae strain FA1090

35.443

100

0.377
  dprA Acinetobacter baylyi ADP1

41.916

90.027

0.377

Multiple sequence alignment