Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GPW70_RS07415 | Genome accession | NZ_CP046740 |
| Coordinates | 520406..520831 (-) | Length | 141 a.a. |
| NCBI ID | WP_032473121.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain 3566-06 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 515406..525831
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPW70_RS07395 | coaE | 515907..516515 (-) | 609 | WP_000011553.1 | dephospho-CoA kinase | - |
| GPW70_RS07400 | pilD | 516512..517387 (-) | 876 | WP_000418753.1 | A24 family peptidase | Machinery gene |
| GPW70_RS07405 | pilC | 517445..518671 (-) | 1227 | WP_000648507.1 | type II secretion system F family protein | Machinery gene |
| GPW70_RS07410 | pilB | 518714..520402 (-) | 1689 | WP_001888471.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPW70_RS07415 | pilA | 520406..520831 (-) | 426 | WP_032473121.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| GPW70_RS07420 | nadC | 521076..521966 (-) | 891 | WP_001888470.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPW70_RS07425 | ampD | 522264..522809 (+) | 546 | WP_000567317.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPW70_RS07430 | - | 522853..524241 (-) | 1389 | WP_001959226.1 | IS4-like element ISVa18 family transposase | - |
| GPW70_RS07435 | fldB | 524406..524924 (-) | 519 | WP_000690112.1 | flavodoxin FldB | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14657.71 Da Isoelectric Point: 8.9683
>NTDB_id=406913 GPW70_RS07415 WP_032473121.1 520406..520831(-) (pilA) [Vibrio cholerae strain 3566-06]
MKAYKNKQQKGFTLIELMIVVAIIGVLAAIAVPAYKDYVTKSELASGFATIKSVITPAELYFQENGKISASASTVDVLGV
SSGANTLGSLTIPSDNQIQFAHNSGAAAGARFVYSRDTSGWSCTYTQPTAVSAAAPKGCAQ
MKAYKNKQQKGFTLIELMIVVAIIGVLAAIAVPAYKDYVTKSELASGFATIKSVITPAELYFQENGKISASASTVDVLGV
SSGANTLGSLTIPSDNQIQFAHNSGAAAGARFVYSRDTSGWSCTYTQPTAVSAAAPKGCAQ
Nucleotide
Download Length: 426 bp
>NTDB_id=406913 GPW70_RS07415 WP_032473121.1 520406..520831(-) (pilA) [Vibrio cholerae strain 3566-06]
ATGAAAGCGTATAAAAACAAACAACAGAAAGGTTTTACCTTAATTGAATTGATGATTGTGGTGGCGATTATTGGCGTGTT
GGCAGCGATTGCTGTGCCTGCTTATAAGGATTATGTAACCAAGAGCGAATTGGCATCTGGTTTCGCTACTATCAAGTCCG
TGATAACTCCAGCTGAACTTTATTTCCAAGAAAATGGAAAAATAAGTGCAAGCGCAAGCACTGTTGACGTTCTCGGTGTA
TCTTCTGGCGCAAATACTTTGGGTTCTCTGACTATTCCGTCTGACAATCAAATTCAATTTGCACATAATTCAGGGGCTGC
GGCAGGTGCAAGATTTGTTTACTCAAGAGACACTAGTGGCTGGAGTTGTACTTATACTCAACCAACCGCTGTGAGTGCTG
CCGCGCCTAAAGGCTGTGCACAATAA
ATGAAAGCGTATAAAAACAAACAACAGAAAGGTTTTACCTTAATTGAATTGATGATTGTGGTGGCGATTATTGGCGTGTT
GGCAGCGATTGCTGTGCCTGCTTATAAGGATTATGTAACCAAGAGCGAATTGGCATCTGGTTTCGCTACTATCAAGTCCG
TGATAACTCCAGCTGAACTTTATTTCCAAGAAAATGGAAAAATAAGTGCAAGCGCAAGCACTGTTGACGTTCTCGGTGTA
TCTTCTGGCGCAAATACTTTGGGTTCTCTGACTATTCCGTCTGACAATCAAATTCAATTTGCACATAATTCAGGGGCTGC
GGCAGGTGCAAGATTTGTTTACTCAAGAGACACTAGTGGCTGGAGTTGTACTTATACTCAACCAACCGCTGTGAGTGCTG
CCGCGCCTAAAGGCTGTGCACAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
48.052 |
100 |
0.525 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.857 |
100 |
0.468 |
| pilA | Vibrio cholerae strain A1552 |
42.857 |
100 |
0.468 |
| pilA | Vibrio cholerae C6706 |
42.857 |
100 |
0.468 |
| pilA | Pseudomonas aeruginosa PAK |
38.158 |
100 |
0.411 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
39.13 |
97.872 |
0.383 |
| pilA | Acinetobacter baumannii strain A118 |
38.686 |
97.163 |
0.376 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
33.974 |
100 |
0.376 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.695 |
92.908 |
0.369 |