Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   GO004_RS16515 Genome accession   NZ_CP046591
Coordinates   3160961..3161302 (+) Length   113 a.a.
NCBI ID   WP_014478203.1    Uniprot ID   A0A0C3GLH9
Organism   Bacillus subtilis strain R31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3155961..3166302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS16475 (GO004_16475) rapD 3156093..3157157 (-) 1065 WP_014481149.1 aspartate phosphatase RapD -
  GO004_RS16480 (GO004_16480) fabZ 3157349..3157774 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  GO004_RS16485 (GO004_16485) mscL 3157846..3158241 (+) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  GO004_RS16490 (GO004_16490) ywpD 3158288..3159124 (-) 837 WP_029726040.1 histidine kinase -
  GO004_RS16495 - 3159053..3159397 (+) 345 WP_142402754.1 prealbumin-like fold domain-containing protein -
  GO004_RS16500 (GO004_16495) - 3159384..3159776 (+) 393 Protein_3232 class A sortase -
  GO004_RS16505 (GO004_16500) ywpF 3159916..3160326 (-) 411 WP_003227794.1 YwpF-like family protein -
  GO004_RS16510 (GO004_16505) ywpG 3160501..3160884 (+) 384 WP_015714843.1 DynA interaction protein YwpG -
  GO004_RS16515 (GO004_16510) ssbB 3160961..3161302 (+) 342 WP_014478203.1 single-stranded DNA-binding protein SsbB Machinery gene
  GO004_RS16520 (GO004_16515) glcR 3161526..3162302 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  GO004_RS16525 (GO004_16520) ywpJ 3162308..3163165 (+) 858 WP_015714842.1 phosphatase YwpJ -
  GO004_RS16530 (GO004_16525) hepAB 3163290..3166058 (-) 2769 WP_015714840.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12462.11 Da        Isoelectric Point: 7.8150

>NTDB_id=405818 GO004_RS16515 WP_014478203.1 3160961..3161302(+) (ssbB) [Bacillus subtilis strain R31]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=405818 GO004_RS16515 WP_014478203.1 3160961..3161302(+) (ssbB) [Bacillus subtilis strain R31]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C3GLH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment