Detailed information NTG0404984

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: GOM47_RS03025
• Genome accession: NZ_CP046524
• Coordinates: 578956..579426 (+)
• Length: 156 a.a.
• NCBI ID: WP_000609595.1
• Uniprot ID: A0A125YWP2
• Organism: Streptococcus oralis strain SOT
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 573956..584426

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GOM47_RS03005 (GOM47_02995)	-	575344..576159 (+)	816	WP_235081017.1	endonuclease/exonuclease/phosphatase family protein	-
GOM47_RS03010 (GOM47_03000)	-	576264..577607 (+)	1344	WP_235081018.1	DEAD/DEAH box helicase	-
GOM47_RS03015 (GOM47_03005)	-	577654..578314 (-)	661	Protein_543	IS30 family transposase	-
GOM47_RS03020 (GOM47_03010)	rpsF	578654..578944 (+)	291	WP_001151782.1	30S ribosomal protein S6	-
GOM47_RS03025 (GOM47_03015)	ssbA	578956..579426 (+)	471	WP_000609595.1	single-stranded DNA-binding protein SsbA	Machinery gene
GOM47_RS03030 (GOM47_03020)	rpsR	579458..579697 (+)	240	WP_000068664.1	30S ribosomal protein S18	-
GOM47_RS03035 (GOM47_03025)	-	579933..580442 (+)	510	Protein_547	GNAT family N-acetyltransferase	-
GOM47_RS03040 (GOM47_03030)	-	580524..581924 (+)	1401	WP_235081019.1	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	-
GOM47_RS03045 (GOM47_03035)	-	581926..582285 (+)	360	WP_125424627.1	S1 RNA-binding domain-containing protein	-
GOM47_RS03050 (GOM47_03040)	-	582321..583067 (+)	747	WP_235081020.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
GOM47_RS03055 (GOM47_03045)	-	583057..583341 (+)	285	WP_235081021.1	GIY-YIG nuclease family protein	-
GOM47_RS03060 (GOM47_03050)	-	583427..584374 (+)	948	WP_235081022.1	manganese-dependent inorganic pyrophosphatase	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17182.08 Da
• Isoelectric Point: 5.2065

>NTDB_id=404984 GOM47_RS03025 WP_000609595.1 578956..579426(+) (ssbA) [Streptococcus oralis strain SOT]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGITGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRGVREGHSGGAYSAPTAGQSAPANPVPDFSRSENPFGATNPLDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=404984 GOM47_RS03025 WP_000609595.1 578956..579426(+) (ssbA) [Streptococcus oralis strain SOT]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACTCGTGACGCTGAGTTACGCTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTCAAGAGTCAAAATGGCGAACGTGAGGCTGATTTCATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCTCTTATCGGGATCACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTAACAGAAGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGCGG
AGTGCGTGAAGGACATTCAGGTGGAGCTTATTCTGCACCAACTGCTGGCCAATCAGCACCTGCAAACCCAGTACCAGACT
TTTCACGTTCTGAAAATCCATTTGGAGCAACCAATCCATTGGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A125YWP2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	55.233	100	0.609
ssb	Latilactobacillus sakei subsp. sakei 23K	52.841	100	0.596
ssb	Neisseria gonorrhoeae MS11	34.286	100	0.385
ssbB/cilA	Streptococcus pneumoniae TIGR4	50.427	75	0.378
ssbB	Streptococcus sobrinus strain NIDR 6715-7	54.128	69.872	0.378
ssbB/cilA	Streptococcus pneumoniae Rx1	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae R6	49.573	75	0.372
ssbB/cilA	Streptococcus mitis SK321	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae D39	49.573	75	0.372
ssbB/cilA	Streptococcus mitis NCTC 12261	49.573	75	0.372
ssb	Neisseria meningitidis MC58	33.143	100	0.372
ssbB	Bacillus subtilis subsp. subtilis str. 168	54.717	67.949	0.372