Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   GOM47_RS02015 Genome accession   NZ_CP046524
Coordinates   394670..395065 (+) Length   131 a.a.
NCBI ID   WP_000282461.1    Uniprot ID   A0A1X1GNR2
Organism   Streptococcus oralis strain SOT     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 389670..400065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS01985 (GOM47_01990) rpoE 389831..390421 (+) 591 WP_235080906.1 DNA-directed RNA polymerase subunit delta -
  GOM47_RS01990 (GOM47_01995) - 390750..392357 (+) 1608 WP_235080907.1 CTP synthase -
  GOM47_RS01995 (GOM47_02000) - 392534..392833 (+) 300 WP_084940480.1 DUF4651 domain-containing protein -
  GOM47_RS02000 (GOM47_02005) - 392830..393147 (+) 318 WP_235080908.1 thioredoxin family protein -
  GOM47_RS02005 (GOM47_02010) ytpR 393163..393789 (+) 627 WP_235080909.1 YtpR family tRNA-binding protein -
  GOM47_RS02010 (GOM47_02015) - 393832..394593 (+) 762 WP_235080910.1 SDR family NAD(P)-dependent oxidoreductase -
  GOM47_RS02015 (GOM47_02020) ssbB/cilA 394670..395065 (+) 396 WP_000282461.1 single-stranded DNA-binding protein Machinery gene
  GOM47_RS02020 (GOM47_02025) groES 395374..395658 (+) 285 WP_000917328.1 co-chaperone GroES -
  GOM47_RS02025 (GOM47_02030) groL 395674..397296 (+) 1623 WP_235080911.1 chaperonin GroEL -
  GOM47_RS02030 (GOM47_02035) - 397421..398188 (+) 768 WP_007522745.1 epoxyqueuosine reductase QueH -
  GOM47_RS02035 (GOM47_02040) - 398259..398792 (-) 534 WP_000775318.1 DUF402 domain-containing protein -
  GOM47_RS02040 (GOM47_02045) recX 398881..399657 (-) 777 WP_235080912.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14879.84 Da        Isoelectric Point: 5.9409

>NTDB_id=404980 GOM47_RS02015 WP_000282461.1 394670..395065(+) (ssbB/cilA) [Streptococcus oralis strain SOT]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNLVLWGKLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=404980 GOM47_RS02015 WP_000282461.1 394670..395065(+) (ssbB/cilA) [Streptococcus oralis strain SOT]
ATGTATAATAAAGTTATCATGATTGGGCGTTTGACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGCGCAACAATCGCTGTGAACCGTCGTTACAAAGACCAGAATGGGGAACGCGAAGCTGATTTTGTCAATCTTGTTCTTT
GGGGAAAATTGGCTGAAACCTTGGCAAGTTACGCAACTAAAGGTAGTCTTATCTCTGTGGATGGAGAACTTCGTACCCGT
CGCTTTGAGAAAAATGGCCAGATGAACTATGTGACTGAAGTTCTTGTGACAGGATTCCAACTTTTGGAAAGTCGTGCCCA
ACGAGCCATGCGTGAAAATAATGCCGGACAGGATTTGGCAGATTTGGTTTTGGAAGAGGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1GNR2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus mitis NCTC 12261

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae Rx1

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae D39

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae R6

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae TIGR4

97.71

100

0.977
  ssbB/cilA Streptococcus mitis SK321

96.947

100

0.969
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

60.714

85.496

0.519
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366

Multiple sequence alignment