Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   GOM48_RS07630 Genome accession   NZ_CP046523
Coordinates   1516524..1516919 (-) Length   131 a.a.
NCBI ID   WP_235097025.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1511524..1521919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS07605 (GOM48_07545) recX 1512081..1512857 (+) 777 WP_235097022.1 recombination regulator RecX -
  GOM48_RS07610 (GOM48_07550) - 1512946..1513479 (+) 534 WP_000775318.1 DUF402 domain-containing protein -
  GOM48_RS07615 (GOM48_07555) - 1513549..1514316 (-) 768 WP_000567567.1 epoxyqueuosine reductase QueH -
  GOM48_RS07620 (GOM48_07560) groL 1514442..1516064 (-) 1623 WP_235097023.1 chaperonin GroEL -
  GOM48_RS07625 (GOM48_07565) groES 1516080..1516364 (-) 285 WP_235097024.1 co-chaperone GroES -
  GOM48_RS07630 (GOM48_07570) ssbB/cilA 1516524..1516919 (-) 396 WP_235097025.1 single-stranded DNA-binding protein Machinery gene
  GOM48_RS07635 (GOM48_07575) - 1516996..1517757 (-) 762 WP_235097026.1 SDR family NAD(P)-dependent oxidoreductase -
  GOM48_RS07640 (GOM48_07580) ytpR 1517799..1518425 (-) 627 WP_235097027.1 YtpR family tRNA-binding protein -
  GOM48_RS07645 (GOM48_07585) - 1518440..1518757 (-) 318 WP_084948560.1 thioredoxin family protein -
  GOM48_RS07650 (GOM48_07590) - 1518754..1519053 (-) 300 WP_084925594.1 DUF4651 domain-containing protein -
  GOM48_RS07655 (GOM48_07595) - 1519229..1520836 (-) 1608 WP_235097028.1 CTP synthase -
  GOM48_RS07660 (GOM48_07600) rpoE 1521167..1521757 (-) 591 WP_000418415.1 DNA-directed RNA polymerase subunit delta -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14814.66 Da        Isoelectric Point: 5.2813

>NTDB_id=404930 GOM48_RS07630 WP_235097025.1 1516524..1516919(-) (ssbB/cilA) [Streptococcus oralis strain SOD]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNLVFWGKLAETLASYATKGSLISVDGELRTR
RYEKNGQMNYVTEVLATGFQLLESSAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=404930 GOM48_RS07630 WP_235097025.1 1516524..1516919(-) (ssbB/cilA) [Streptococcus oralis strain SOD]
ATGTATAATAAAGTTATCTTAATCGGGCGTTTGACGTCTACACCAGAACTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGTGCAACTATCGCTGTGAATCGTCGTTACAAAGACCAAAACGGGGAACGTGAAGCTGACTTTGTCAATCTTGTTTTTT
GGGGAAAATTGGCTGAAACCTTAGCAAGTTACGCAACCAAAGGTAGTCTTATTTCTGTTGATGGGGAGTTGCGTACCCGT
CGCTACGAGAAAAATGGTCAGATGAACTATGTGACCGAAGTTCTCGCCACAGGATTCCAACTTTTAGAAAGCAGTGCCCA
ACGTGCCATGCGTGAAAATAACGCGGGTCAAGACTTGGCAGACTTGGTTTTGGAAGAGGAGGAATTGCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

95.42

100

0.954
  ssbB/cilA Streptococcus mitis NCTC 12261

94.656

100

0.947
  ssbB/cilA Streptococcus pneumoniae Rx1

94.656

100

0.947
  ssbB/cilA Streptococcus pneumoniae D39

94.656

100

0.947
  ssbB/cilA Streptococcus pneumoniae R6

94.656

100

0.947
  ssbB/cilA Streptococcus mitis SK321

94.656

100

0.947
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

73.282

100

0.733
  ssbB Lactococcus lactis subsp. cremoris KW2

60.714

85.496

0.519
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.333

80.153

0.427
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbB Bacillus subtilis subsp. subtilis str. 168

48.077

79.389

0.382

Multiple sequence alignment