Detailed information NTG0404890

Bioinformatically predicted

Overview

• Name: comGD/cglD
• Type: Machinery gene
• Locus tag: GOM48_RS00940
• Genome accession: NZ_CP046523
• Coordinates: 184420..184854 (+)
• Length: 144 a.a.
• NCBI ID: WP_235097798.1
• Uniprot ID: -
• Organism: Streptococcus oralis strain SOD
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 179420..189854

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GOM48_RS00915 (GOM48_00900)	nagA	180500..181651 (+)	1152	WP_084945412.1	N-acetylglucosamine-6-phosphate deacetylase	-
GOM48_RS00920 (GOM48_00905)	-	181800..182165 (+)	366	WP_000286399.1	DUF1033 family protein	-
GOM48_RS00925 (GOM48_00910)	comGA/cglA/cilD	182227..183168 (+)	942	WP_235097792.1	competence type IV pilus ATPase ComGA	Machinery gene
GOM48_RS00930 (GOM48_00915)	comGB/cglB	183116..184132 (+)	1017	WP_235097794.1	competence type IV pilus assembly protein ComGB	Machinery gene
GOM48_RS00935 (GOM48_00920)	comGC/cglC	184134..184457 (+)	324	WP_235097796.1	competence type IV pilus major pilin ComGC	Machinery gene
GOM48_RS00940 (GOM48_00925)	comGD/cglD	184420..184854 (+)	435	WP_235097798.1	competence type IV pilus minor pilin ComGD	Machinery gene
GOM48_RS00945 (GOM48_00930)	comGE/cglE	184817..185119 (+)	303	WP_235097800.1	competence type IV pilus minor pilin ComGE	Machinery gene
GOM48_RS00950 (GOM48_00935)	comGF/cglF	185082..185543 (+)	462	WP_002875275.1	competence type IV pilus minor pilin ComGF	Machinery gene
GOM48_RS00955 (GOM48_00940)	comGG/cglG	185521..185934 (+)	414	WP_235097802.1	competence type IV pilus minor pilin ComGG	Machinery gene
GOM48_RS00960 (GOM48_00945)	-	185967..186557 (+)	591	WP_235097805.1	class I SAM-dependent methyltransferase	-
GOM48_RS00965 (GOM48_00950)	comYH	186616..187569 (+)	954	WP_235097806.1	class I SAM-dependent methyltransferase	Machinery gene
GOM48_RS00970 (GOM48_00955)	-	187619..188809 (+)	1191	WP_235097808.1	acetate kinase	-
GOM48_RS00975 (GOM48_00960)	rnpA	188958..189329 (+)	372	WP_000748124.1	ribonuclease P protein component	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 15887.36 Da
• Isoelectric Point: 10.5548

>NTDB_id=404890 GOM48_RS00940 WP_235097798.1 184420..184854(+) (comGD/cglD) [Streptococcus oralis strain SOD]
MQNKKQVKLLRIKAFTMLESLLVLGLVSIIALALSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQT
ISNGSQNLIVPKGIQAPSGQSIIFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRTKETKN

Nucleotide

• Length: 435 bp

>NTDB_id=404890 GOM48_RS00940 WP_235097798.1 184420..184854(+) (comGD/cglD) [Streptococcus oralis strain SOD]
ATGCAAAACAAAAAACAAGTCAAACTGTTGCGGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGTTTTGGGACTTGT
GAGTATCATTGCCTTGGCTTTATCAGGTTCTGTCCAGTCCACTTTTGCGGCGGTAGAGGAGCAGATTTTCTTTATGGAAT
TTGAAGAACTCTATCGGGAAACCCAAAAGCGCAGTGTTGCTAGTCAGCAAAAGACCAGCTTGAACTTAGATGGACAGACG
ATCAGCAATGGCAGTCAAAACTTGATCGTTCCTAAAGGAATTCAGGCGCCATCAGGACAAAGCATTATATTTGACCGAGC
TGGGGGCAATTCGTCCCTGGCTAAGGTTGAATTTCAGACCAGCAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATG
GAAAAATTAAACGTACTAAGGAAACAAAAAATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD/cglD	Streptococcus mitis NCTC 12261	90.972	100	0.91
comGD/cglD	Streptococcus pneumoniae TIGR4	93.985	92.361	0.868
comGD/cglD	Streptococcus mitis SK321	93.985	92.361	0.868
comGD/cglD	Streptococcus pneumoniae Rx1	93.985	92.361	0.868
comGD/cglD	Streptococcus pneumoniae D39	93.985	92.361	0.868
comGD/cglD	Streptococcus pneumoniae R6	93.985	92.361	0.868
comYD	Streptococcus gordonii str. Challis substr. CH1	60.769	90.278	0.549
comYD	Streptococcus mutans UA140	49.618	90.972	0.451
comYD	Streptococcus mutans UA159	49.618	90.972	0.451