Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   GOM48_RS00955 Genome accession   NZ_CP046523
Coordinates   185521..185934 (+) Length   137 a.a.
NCBI ID   WP_235097802.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 180521..190934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS00920 (GOM48_00905) - 181800..182165 (+) 366 WP_000286399.1 DUF1033 family protein -
  GOM48_RS00925 (GOM48_00910) comGA/cglA/cilD 182227..183168 (+) 942 WP_235097792.1 competence type IV pilus ATPase ComGA Machinery gene
  GOM48_RS00930 (GOM48_00915) comGB/cglB 183116..184132 (+) 1017 WP_235097794.1 competence type IV pilus assembly protein ComGB Machinery gene
  GOM48_RS00935 (GOM48_00920) comGC/cglC 184134..184457 (+) 324 WP_235097796.1 competence type IV pilus major pilin ComGC Machinery gene
  GOM48_RS00940 (GOM48_00925) comGD/cglD 184420..184854 (+) 435 WP_235097798.1 competence type IV pilus minor pilin ComGD Machinery gene
  GOM48_RS00945 (GOM48_00930) comGE/cglE 184817..185119 (+) 303 WP_235097800.1 competence type IV pilus minor pilin ComGE Machinery gene
  GOM48_RS00950 (GOM48_00935) comGF/cglF 185082..185543 (+) 462 WP_002875275.1 competence type IV pilus minor pilin ComGF Machinery gene
  GOM48_RS00955 (GOM48_00940) comGG/cglG 185521..185934 (+) 414 WP_235097802.1 competence type IV pilus minor pilin ComGG Machinery gene
  GOM48_RS00960 (GOM48_00945) - 185967..186557 (+) 591 WP_235097805.1 class I SAM-dependent methyltransferase -
  GOM48_RS00965 (GOM48_00950) comYH 186616..187569 (+) 954 WP_235097806.1 class I SAM-dependent methyltransferase Machinery gene
  GOM48_RS00970 (GOM48_00955) - 187619..188809 (+) 1191 WP_235097808.1 acetate kinase -
  GOM48_RS00975 (GOM48_00960) rnpA 188958..189329 (+) 372 WP_000748124.1 ribonuclease P protein component -
  GOM48_RS00980 (GOM48_00965) - 189304..190116 (+) 813 WP_235097810.1 YidC/Oxa1 family membrane protein insertase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15819.33 Da        Isoelectric Point: 10.6689

>NTDB_id=404893 GOM48_RS00955 WP_235097802.1 185521..185934(+) (comGG/cglG) [Streptococcus oralis strain SOD]
MWKKQKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHHKDFVLNKEKLIAFAMAKRSKDKAEQESGERVFNLGKVRYQNTK
TGFATSVRMNKGNYEFLFPPMKAKEKKTDKKQQLVTDSNPEQNQQKTEDKADKKANS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=404893 GOM48_RS00955 WP_235097802.1 185521..185934(+) (comGG/cglG) [Streptococcus oralis strain SOD]
GTGTGGAAAAAACAAAAAGTTAAGGCAGGCGTTCTTTTATATGCAGTCACCATGGCAGCCATTTTTAGCCTTTTGTTGCA
GTTTTATTTGAATCGGCAAGTAGCTCATCACAAAGACTTTGTCCTAAACAAAGAAAAGTTGATCGCTTTTGCCATGGCCA
AGCGAAGTAAGGATAAGGCTGAGCAAGAAAGTGGAGAACGAGTCTTTAACTTAGGAAAAGTCAGATATCAAAATACGAAA
ACAGGTTTTGCAACAAGTGTTCGTATGAATAAGGGTAACTATGAATTTCTCTTTCCTCCGATGAAAGCCAAGGAAAAGAA
AACGGATAAAAAGCAACAGCTAGTGACTGATTCAAATCCAGAACAAAATCAACAAAAAACAGAAGATAAGGCAGATAAGA
AAGCCAATTCCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis NCTC 12261

75.63

86.861

0.657
  comGG/cglG Streptococcus pneumoniae Rx1

74.359

85.401

0.635
  comGG/cglG Streptococcus pneumoniae D39

74.359

85.401

0.635
  comGG/cglG Streptococcus pneumoniae R6

74.359

85.401

0.635
  comGG/cglG Streptococcus pneumoniae TIGR4

74.359

85.401

0.635
  comGG/cglG Streptococcus mitis SK321

73.109

86.861

0.635

Multiple sequence alignment