Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | GOM48_RS00965 | Genome accession | NZ_CP046523 |
| Coordinates | 186616..187569 (+) | Length | 317 a.a. |
| NCBI ID | WP_235097806.1 | Uniprot ID | - |
| Organism | Streptococcus oralis strain SOD | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 181616..192569
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GOM48_RS00920 (GOM48_00905) | - | 181800..182165 (+) | 366 | WP_000286399.1 | DUF1033 family protein | - |
| GOM48_RS00925 (GOM48_00910) | comGA/cglA/cilD | 182227..183168 (+) | 942 | WP_235097792.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GOM48_RS00930 (GOM48_00915) | comGB/cglB | 183116..184132 (+) | 1017 | WP_235097794.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| GOM48_RS00935 (GOM48_00920) | comGC/cglC | 184134..184457 (+) | 324 | WP_235097796.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GOM48_RS00940 (GOM48_00925) | comGD/cglD | 184420..184854 (+) | 435 | WP_235097798.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| GOM48_RS00945 (GOM48_00930) | comGE/cglE | 184817..185119 (+) | 303 | WP_235097800.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| GOM48_RS00950 (GOM48_00935) | comGF/cglF | 185082..185543 (+) | 462 | WP_002875275.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| GOM48_RS00955 (GOM48_00940) | comGG/cglG | 185521..185934 (+) | 414 | WP_235097802.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| GOM48_RS00960 (GOM48_00945) | - | 185967..186557 (+) | 591 | WP_235097805.1 | class I SAM-dependent methyltransferase | - |
| GOM48_RS00965 (GOM48_00950) | comYH | 186616..187569 (+) | 954 | WP_235097806.1 | class I SAM-dependent methyltransferase | Machinery gene |
| GOM48_RS00970 (GOM48_00955) | - | 187619..188809 (+) | 1191 | WP_235097808.1 | acetate kinase | - |
| GOM48_RS00975 (GOM48_00960) | rnpA | 188958..189329 (+) | 372 | WP_000748124.1 | ribonuclease P protein component | - |
| GOM48_RS00980 (GOM48_00965) | - | 189304..190116 (+) | 813 | WP_235097810.1 | YidC/Oxa1 family membrane protein insertase | - |
| GOM48_RS00985 (GOM48_00970) | jag | 190134..191123 (+) | 990 | WP_235097812.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| GOM48_RS00990 (GOM48_00975) | - | 191175..191798 (+) | 624 | WP_235097814.1 | ribonuclease P | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35564.93 Da Isoelectric Point: 4.4202
>NTDB_id=404894 GOM48_RS00965 WP_235097806.1 186616..187569(+) (comYH) [Streptococcus oralis strain SOD]
MDFEKIEQAYTYLLENVQVIQSDLVTNFYDALVEQNSIYLDGETELEKVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVLVVEELFEQEEISILEIGSGMGILGATFLTSLAKKVDYLGIEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SNLLKGWLKEKASLVAMISLPETLFSHASQAKTIFVLQKKAAKELVPFIYPLESLQDPAALMKFKENFQKWSKGTEM
MDFEKIEQAYTYLLENVQVIQSDLVTNFYDALVEQNSIYLDGETELEKVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVLVVEELFEQEEISILEIGSGMGILGATFLTSLAKKVDYLGIEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SNLLKGWLKEKASLVAMISLPETLFSHASQAKTIFVLQKKAAKELVPFIYPLESLQDPAALMKFKENFQKWSKGTEM
Nucleotide
Download Length: 954 bp
>NTDB_id=404894 GOM48_RS00965 WP_235097806.1 186616..187569(+) (comYH) [Streptococcus oralis strain SOD]
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGTGACTAA
CTTTTATGATGCCTTGGTAGAGCAAAATAGTATCTACCTAGATGGTGAGACTGAGTTAGAGAAGGTAAAAGAGAACAATC
AAGCCCTTAAGCGCCTAGCACTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCAGGACAAACG
GAGCCTTTACAGGCCAATCACCAGTTTACACCAGATGCCATTGCTCTCCTCTTGGTACTTGTTGTGGAAGAATTGTTTGA
ACAAGAGGAAATTAGCATCCTCGAAATAGGTTCTGGTATGGGGATTTTGGGGGCTACTTTCTTGACTTCTCTTGCTAAAA
AAGTAGATTACTTGGGAATCGAAGTGGATGACTTGCTGATTGATTTGGCAGCCAGTATGGCAGATGTGATTGGTTTGCAA
GCTGGTTTTGTCCAAGGAGACGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTAGG
CTATTACCCAGACGATGCCATCGCTTCTCGCTATCAAGTGGCTTCTAGTCAAGAGCATACCTATGCCCACCATTTGCTGA
TGGAACAAGGCCTCAAGTACCTTAAGTCAGATGGCTATGCTATTTTTCTAGCTCCGAGTGATTTACTAACCAGTCCTCAA
AGTAATTTGTTAAAAGGTTGGCTTAAAGAGAAAGCGAGCTTAGTTGCGATGATTAGCTTGCCAGAGACACTATTTTCTCA
TGCTAGCCAAGCAAAGACAATCTTTGTTTTACAAAAGAAAGCTGCAAAGGAGTTGGTTCCGTTTATCTATCCGCTAGAAA
GTTTGCAAGATCCAGCTGCACTAATGAAATTTAAAGAAAATTTTCAAAAATGGAGCAAAGGTACTGAAATGTAA
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGTGACTAA
CTTTTATGATGCCTTGGTAGAGCAAAATAGTATCTACCTAGATGGTGAGACTGAGTTAGAGAAGGTAAAAGAGAACAATC
AAGCCCTTAAGCGCCTAGCACTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCAGGACAAACG
GAGCCTTTACAGGCCAATCACCAGTTTACACCAGATGCCATTGCTCTCCTCTTGGTACTTGTTGTGGAAGAATTGTTTGA
ACAAGAGGAAATTAGCATCCTCGAAATAGGTTCTGGTATGGGGATTTTGGGGGCTACTTTCTTGACTTCTCTTGCTAAAA
AAGTAGATTACTTGGGAATCGAAGTGGATGACTTGCTGATTGATTTGGCAGCCAGTATGGCAGATGTGATTGGTTTGCAA
GCTGGTTTTGTCCAAGGAGACGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTAGG
CTATTACCCAGACGATGCCATCGCTTCTCGCTATCAAGTGGCTTCTAGTCAAGAGCATACCTATGCCCACCATTTGCTGA
TGGAACAAGGCCTCAAGTACCTTAAGTCAGATGGCTATGCTATTTTTCTAGCTCCGAGTGATTTACTAACCAGTCCTCAA
AGTAATTTGTTAAAAGGTTGGCTTAAAGAGAAAGCGAGCTTAGTTGCGATGATTAGCTTGCCAGAGACACTATTTTCTCA
TGCTAGCCAAGCAAAGACAATCTTTGTTTTACAAAAGAAAGCTGCAAAGGAGTTGGTTCCGTTTATCTATCCGCTAGAAA
GTTTGCAAGATCCAGCTGCACTAATGAAATTTAAAGAAAATTTTCAAAAATGGAGCAAAGGTACTGAAATGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
56.913 |
98.107 |
0.558 |
| comYH | Streptococcus mutans UA159 |
56.592 |
98.107 |
0.555 |