Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | GFX43_RS03445 | Genome accession | NZ_CP046448 |
| Coordinates | 654304..654645 (+) | Length | 113 a.a. |
| NCBI ID | WP_015384858.1 | Uniprot ID | - |
| Organism | Bacillus subtilis strain ZD01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 649304..659645
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFX43_RS03430 (GFX43_003430) | - | 652496..653134 (+) | 639 | WP_015483797.1 | class A sortase | - |
| GFX43_RS03435 (GFX43_003435) | ywpF | 653259..653669 (-) | 411 | WP_015384859.1 | YwpF-like family protein | - |
| GFX43_RS03440 (GFX43_003440) | ywpG | 653844..654227 (+) | 384 | WP_003227796.1 | DynA interaction protein YwpG | - |
| GFX43_RS03445 (GFX43_003445) | ssbB | 654304..654645 (+) | 342 | WP_015384858.1 | single-stranded DNA-binding protein SsbB | Machinery gene |
| GFX43_RS03450 (GFX43_003450) | glcR | 654870..655646 (+) | 777 | WP_003244075.1 | transcriptional regulator GlcR | - |
| GFX43_RS03455 (GFX43_003455) | ywpJ | 655652..656509 (+) | 858 | WP_015384856.1 | phosphatase YwpJ | - |
| GFX43_RS03460 (GFX43_003460) | hepAB | 656635..659403 (-) | 2769 | WP_015384855.1 | DEAD/DEAH box helicase | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12476.14 Da Isoelectric Point: 7.8150
>NTDB_id=404371 GFX43_RS03445 WP_015384858.1 654304..654645(+) (ssbB) [Bacillus subtilis strain ZD01]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLIGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLIGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD
Nucleotide
Download Length: 342 bp
>NTDB_id=404371 GFX43_RS03445 WP_015384858.1 654304..654645(+) (ssbB) [Bacillus subtilis strain ZD01]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCATCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCATCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
98.23 |
100 |
0.982 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
93.805 |
0.602 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.491 |
93.805 |
0.549 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.37 |
95.575 |
0.434 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.37 |
95.575 |
0.434 |
| ssbA | Streptococcus mutans UA159 |
45.283 |
93.805 |
0.425 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.444 |
95.575 |
0.425 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
42.857 |
92.92 |
0.398 |