Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SALIVA_RS02700 Genome accession   NC_017595
Coordinates   548983..550719 (+) Length   578 a.a.
NCBI ID   WP_014634072.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 543983..555719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS02680 (SALIVA_0541) - 544276..544683 (+) 408 WP_014634068.1 hypothetical protein -
  SALIVA_RS02685 (SALIVA_2090) - 544860..546221 (-) 1362 WP_014634069.1 hypothetical protein -
  SALIVA_RS02690 (SALIVA_0542) - 547045..547311 (+) 267 WP_014634070.1 DUF3173 family protein -
  SALIVA_RS02695 (SALIVA_0543) - 547301..548526 (+) 1226 Protein_477 tyrosine-type recombinase/integrase -
  SALIVA_RS02700 (SALIVA_0544) rcrP 548983..550719 (+) 1737 WP_014634072.1 ABC transporter ATP-binding protein Regulator
  SALIVA_RS02705 (SALIVA_0545) rcrQ 550732..552519 (+) 1788 WP_014634073.1 ABC transporter ATP-binding protein Regulator
  SALIVA_RS02710 (SALIVA_0546) queA 552616..553659 (-) 1044 WP_014634074.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SALIVA_RS02715 (SALIVA_0547) - 553811..554512 (+) 702 WP_014634075.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64831.79 Da        Isoelectric Point: 5.5882

>NTDB_id=40269 SALIVA_RS02700 WP_014634072.1 548983..550719(+) (rcrP) [Streptococcus salivarius JIM8777]
MAYIWSYLRRYPKWLAMNFTAAILFVIANLGLPTVLARMIDEGINRGDVDKLYAYAWVMFGVVLTGIVGRILLSYAVGKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFAEQILKMGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPFLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSNKLFKLTGLTE
PLFVQIIIAMIVAIVWFALEPLGSGTLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETETKGYLEFDNVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIDSKEDRYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=40269 SALIVA_RS02700 WP_014634072.1 548983..550719(+) (rcrP) [Streptococcus salivarius JIM8777]
ATGGCTTATATTTGGTCTTATCTCAGGCGTTATCCTAAGTGGCTAGCAATGAATTTTACGGCGGCTATTTTATTTGTTAT
TGCTAACTTAGGTCTGCCGACGGTTCTTGCCAGAATGATTGATGAGGGAATAAACCGTGGTGATGTTGATAAGCTTTACG
CTTATGCTTGGGTCATGTTTGGTGTAGTTTTGACTGGGATTGTTGGTCGTATACTTCTGTCCTATGCGGTTGGTAAGTTG
ACCACTACTATGGTACAGGTCATGCGTAATGACATTTATGCTAAGCTTCAGGAGTATTCCCACCATGAGTACGAGCAGAT
TGGGGTATCCTCTTTGGTGACTCGTATCACGTCGGATGCTTTTGTCCTCATGCAATTTGCAGAACAGATTTTAAAGATGG
GTGTCATTACTCCTCTGATGATGGTTTCCAGTGTCTTCTTGATTTTAACGACAAGTCCATCTTTGGCTTGGATTGTAGCA
ATTTCCTTGCCTTTCCTAGCCGTAGTAGTCTGGTATGTAGCGGTAAAAACACGTCCGCTTTCTGAGAAGCAACAGGCAAC
ACTTGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGAGCTTTCGCTAGAGAAGATTTTC
AAGAGAAGAAGTTTGCTTCTGAAAATGCTGTCTATGCGGATAATTCAAACAAACTCTTTAAATTAACTGGTTTGACTGAG
CCACTTTTTGTGCAAATTATCATCGCCATGATTGTGGCTATTGTTTGGTTTGCCCTCGAGCCTTTAGGTTCTGGGACTTT
GGCAATCGGGGATTTGGTTGCCTTTATTGAGTACAGTTTCCATGCGCTATTGTCTTTCCTTTTCCTAGCTAACCTCTTTA
CCATGTATCCTCGTACGGCGGTATCTAGTGAACGTCTGCAGGAGATTATGGATATGCCTATTTCTATTAATCCAAATGAA
GACGGGGTGACAGAGACTGAGACTAAAGGATATTTGGAGTTTGACAATGTGACTTTTGCCTATCCTGGTGAAACTGAAAG
TCCTGTCCTACACAATATTTCTTTCAAGGCTAAACCAGGTGAAACCATTGCCTTTATTGGATCTACGGGTTCAGGAAAAT
CATCACTTGTGCAGTTGATTCCACGCTTTTATGATGTGACACTTGGACGCATTCTTGTTGATGGTGTGGATGTCCGTGAC
TATAATCTGAAGGCTCTTCGTCGTAAGATTGGCTTTATTCCACAAAAAGCCCTGCTCTTTACAGGAACCATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCCAGTCATGAAGAATTGAATCAAGCTACGGATGTCGCTCAGGCGAAGGAATTTATCG
ACAGTAAGGAAGACCGCTACGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAGAAGCAACGTTTGTCA
ATTGCACGTGCCGTGGTTAAACGTCCTGACCTTTACATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACCTTGCGCCGTCGTCTAAAAGAAGTGACCCAGGATGCGACGGTCTTGATTGTGGCTCAACGTGTGGGTACTATCATGG
ATGCAGACCAGATTATCGTTCTTGATAAGGGTGAAATCGTGGGTCGAGGCCGTCACGAAGAGCTTATGGAAAGCAATGAG
ATTTACCGTGAAATTGCTAATTCTCAATTGAATCAAAAGAGTCTTACAGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(17-279)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.775

92.215

0.367

Multiple sequence alignment