Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SOR_RS03145 Genome accession   NC_015291
Coordinates   609656..610126 (+) Length   156 a.a.
NCBI ID   WP_000609596.1    Uniprot ID   A0A139PWT6
Organism   Streptococcus oralis Uo5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 604656..615126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS03115 (SOR_0636) - 604839..605387 (-) 549 WP_000039638.1 NADPH-dependent FMN reductase -
  SOR_RS03120 (SOR_0637) - 605479..605925 (-) 447 WP_000816314.1 MarR family winged helix-turn-helix transcriptional regulator -
  SOR_RS03125 (SOR_0638) - 606044..606520 (+) 477 WP_000776850.1 DUF5590 domain-containing protein -
  SOR_RS03130 (SOR_0639) - 606530..607708 (+) 1179 WP_000777460.1 pyridoxal phosphate-dependent aminotransferase -
  SOR_RS03135 (SOR_0640) asnS 607861..609204 (+) 1344 WP_000167169.1 asparagine--tRNA ligase -
  SOR_RS03140 (SOR_0641) rpsF 609354..609644 (+) 291 WP_001151782.1 30S ribosomal protein S6 -
  SOR_RS03145 (SOR_0642) ssbA 609656..610126 (+) 471 WP_000609596.1 single-stranded DNA-binding protein SsbA Machinery gene
  SOR_RS03150 (SOR_0643) rpsR 610158..610397 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  SOR_RS03155 (SOR_0644) - 610805..611314 (+) 510 WP_000450288.1 GNAT family N-acetyltransferase -
  SOR_RS03160 (SOR_0645) wecB 611749..612903 (+) 1155 WP_000734431.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -
  SOR_RS03165 (SOR_0646) - 612905..613684 (+) 780 WP_000800623.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17196.10 Da        Isoelectric Point: 5.2065

>NTDB_id=40190 SOR_RS03145 WP_000609596.1 609656..610126(+) (ssbA) [Streptococcus oralis Uo5]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGITGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRGVREGHTGGAYSAPTAGQSAPANPVPDFSRSENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=40190 SOR_RS03145 WP_000609596.1 609656..610126(+) (ssbA) [Streptococcus oralis Uo5]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGTCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCTCTTATCGGGATAACAGGCCGTATCCAGACTCGT
AGTTACGATAATCAGCAAGGACAACGTGTCTACGTAACAGAAGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTGG
AGTGCGTGAAGGACATACAGGTGGAGCTTATTCTGCACCAACTGCTGGTCAATCAGCACCTGCAAACCCAGTACCAGACT
TTTCACGTTCTGAAAATCCATTTGGAGCAACCAATCCATTGGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A139PWT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.651

100

0.603
  ssb Latilactobacillus sakei subsp. sakei 23K

52.841

100

0.596
  ssbB/cilA Streptococcus pneumoniae TIGR4

50.427

75

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378
  ssb Neisseria gonorrhoeae MS11

33.714

100

0.378
  ssbB/cilA Streptococcus pneumoniae R6

49.573

75

0.372
  ssbB/cilA Streptococcus pneumoniae Rx1

49.573

75

0.372
  ssbB/cilA Streptococcus pneumoniae D39

49.573

75

0.372
  ssbB/cilA Streptococcus mitis NCTC 12261

49.573

75

0.372
  ssbB/cilA Streptococcus mitis SK321

49.573

75

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.717

67.949

0.372
  ssb Neisseria meningitidis MC58

32.571

100

0.365

Multiple sequence alignment