Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GH975_RS10260 Genome accession   NZ_CP045871
Coordinates   2017437..2018681 (+) Length   414 a.a.
NCBI ID   WP_153714433.1    Uniprot ID   A0A5Q2QGH3
Organism   Litorivicinus lipolyticus strain IMCC 1097     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2012437..2023681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH975_RS10235 (GH975_10235) - 2012578..2013354 (+) 777 WP_153714428.1 YdcF family protein -
  GH975_RS10240 (GH975_10240) - 2013439..2014386 (+) 948 WP_153714429.1 diguanylate cyclase domain-containing protein -
  GH975_RS12275 (GH975_10245) pilA 2014440..2014904 (-) 465 WP_153714430.1 pilin Machinery gene
  GH975_RS10250 (GH975_10250) pilA2 2015124..2015522 (-) 399 WP_153714431.1 pilin Machinery gene
  GH975_RS10255 (GH975_10255) pilB 2015727..2017424 (+) 1698 WP_153714432.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GH975_RS10260 (GH975_10260) pilC 2017437..2018681 (+) 1245 WP_153714433.1 type II secretion system F family protein Machinery gene
  GH975_RS10265 (GH975_10265) pilD 2018706..2019593 (+) 888 WP_153714434.1 A24 family peptidase Machinery gene
  GH975_RS10270 (GH975_10270) coaE 2019590..2020189 (+) 600 WP_153714435.1 dephospho-CoA kinase -
  GH975_RS10275 (GH975_10275) - 2020186..2020395 (+) 210 WP_153714436.1 DNA gyrase inhibitor YacG -
  GH975_RS10280 (GH975_10280) mutT 2020359..2020781 (-) 423 WP_153714437.1 8-oxo-dGTP diphosphatase MutT -
  GH975_RS10285 (GH975_10285) argJ 2020762..2021934 (-) 1173 WP_153714438.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44829.41 Da        Isoelectric Point: 9.4911

>NTDB_id=398926 GH975_RS10260 WP_153714433.1 2017437..2018681(+) (pilC) [Litorivicinus lipolyticus strain IMCC 1097]
MATATATARTEIRKDKDLYVWNGVDKRGRKVNGEITGANVALVRAQLRRQGIVPDKVRKKPKPLFGERKAAIKPGDVAIF
TRQLATMMKAGVPLVQAFEIVADGLDNATLKKLIGDIKLDVEGGTSFANALKRHPKHFDDLFTSLVDAGEQAGALETMLD
RLATYKEKTEALKAKIKKAMTYPIAVLVVAFVVTVILLVKVVPQFESMFTSFGGELPAFTQVVVAMSEWAQQYWFIGIGV
IAAAVFGFSTAVKRSDKFATRVDAFLLKAPIVGDIVTQSAIARYCRTLSTTFAAGVPLVEALDSAAGAAGNRIYYAAIKI
IRDDVETGQQLQFSMRAAGIFPNMVIQMVSIGEESGALDEMLHKAANHYEDAVDNSVDNLTALMEPMIMSFLGVVIGGLV
VAMYLPIFQMGSVV

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=398926 GH975_RS10260 WP_153714433.1 2017437..2018681(+) (pilC) [Litorivicinus lipolyticus strain IMCC 1097]
ATGGCCACAGCCACTGCAACCGCCCGCACCGAGATCCGCAAGGACAAAGACCTGTACGTTTGGAACGGGGTCGATAAACG
CGGCCGCAAGGTCAACGGCGAAATTACCGGCGCCAACGTCGCCCTGGTGCGCGCCCAATTGCGCCGCCAGGGGATCGTCC
CGGACAAGGTCCGCAAAAAGCCCAAGCCGCTGTTTGGCGAACGCAAGGCGGCGATCAAGCCGGGTGACGTCGCCATATTT
ACGCGCCAGTTGGCGACCATGATGAAGGCCGGCGTGCCGCTGGTTCAGGCCTTTGAAATTGTTGCCGACGGCTTGGACAA
TGCGACCCTGAAAAAACTGATCGGAGACATCAAACTGGATGTCGAGGGCGGGACCTCCTTTGCCAACGCGCTGAAACGTC
ACCCCAAACATTTTGACGACCTGTTCACCTCACTGGTTGATGCCGGCGAACAGGCCGGCGCGTTAGAAACCATGTTGGAC
CGGCTGGCGACCTACAAGGAAAAAACCGAGGCGCTCAAGGCCAAGATCAAAAAAGCCATGACCTACCCGATCGCGGTCTT
GGTGGTGGCGTTTGTGGTCACGGTGATTTTGTTGGTTAAGGTGGTGCCGCAGTTCGAATCGATGTTCACCTCGTTTGGCG
GCGAATTGCCCGCGTTCACCCAAGTGGTGGTGGCGATGTCGGAGTGGGCCCAGCAGTACTGGTTTATCGGCATCGGAGTC
ATTGCCGCGGCCGTGTTTGGGTTTTCTACGGCGGTTAAACGAAGCGACAAATTCGCCACCCGCGTGGATGCATTTTTGCT
CAAGGCGCCGATTGTCGGTGACATCGTGACCCAGTCCGCGATTGCCCGGTATTGCCGCACCCTATCGACCACCTTTGCCG
CCGGTGTGCCGCTGGTTGAAGCCTTGGACAGCGCCGCTGGAGCCGCCGGCAATCGTATTTACTACGCCGCGATCAAGATC
ATCCGAGACGACGTCGAAACCGGCCAACAACTTCAATTCAGCATGCGTGCGGCCGGCATCTTTCCCAACATGGTCATTCA
AATGGTCTCAATTGGCGAAGAATCCGGCGCCCTCGACGAGATGCTGCACAAGGCGGCCAATCACTATGAAGACGCGGTCG
ACAATTCGGTGGATAACCTGACCGCGTTGATGGAGCCGATGATTATGTCGTTCCTGGGGGTAGTCATTGGGGGATTGGTG
GTGGCAATGTACCTGCCGATATTCCAAATGGGGTCGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(80-203)

Type II secretion system (T2SS), protein F (T2SSF)

(285-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q2QGH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

60.553

96.135

0.582
  pilC Pseudomonas stutzeri DSM 10701

60.202

95.894

0.577
  pilC Acinetobacter baumannii D1279779

60.202

95.894

0.577
  pilC Legionella pneumophila strain ERS1305867

55.051

95.652

0.527
  pilG Neisseria gonorrhoeae MS11

46.269

97.101

0.449
  pilG Neisseria meningitidis 44/76-A

46.02

97.101

0.447
  pilC Vibrio cholerae strain A1552

43.939

95.652

0.42
  pilC Vibrio campbellii strain DS40M4

42.569

95.894

0.408

Multiple sequence alignment