Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GII23_RS07285 Genome accession   NZ_CP045858
Coordinates   1576061..1577281 (+) Length   406 a.a.
NCBI ID   WP_165562833.1    Uniprot ID   -
Organism   Stutzerimonas balearica strain EC28     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1571061..1582281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII23_RS07260 (GII23_07240) - 1571669..1572502 (-) 834 WP_165562828.1 hypothetical protein -
  GII23_RS07265 (GII23_07245) - 1572499..1573299 (-) 801 WP_165562829.1 ABC transporter permease -
  GII23_RS07270 (GII23_07250) - 1573357..1573812 (-) 456 WP_165562830.1 hypothetical protein -
  GII23_RS22155 (GII23_07255) pilA 1573830..1574015 (-) 186 WP_165562831.1 type IV pilin protein Machinery gene
  GII23_RS07280 (GII23_07260) pilB 1574355..1576058 (+) 1704 WP_165562832.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GII23_RS07285 (GII23_07265) pilC 1576061..1577281 (+) 1221 WP_165562833.1 type II secretion system F family protein Machinery gene
  GII23_RS07290 (GII23_07270) pilD 1577287..1578150 (+) 864 WP_165562834.1 A24 family peptidase Machinery gene
  GII23_RS07295 (GII23_07275) coaE 1578282..1578890 (+) 609 WP_165562835.1 dephospho-CoA kinase -
  GII23_RS07300 (GII23_07280) yacG 1578887..1579084 (+) 198 WP_102840588.1 DNA gyrase inhibitor YacG -
  GII23_RS07305 (GII23_07285) - 1579109..1579789 (-) 681 WP_165562836.1 energy-coupling factor ABC transporter permease -
  GII23_RS07310 (GII23_07290) rplM 1580156..1580584 (+) 429 WP_165562837.1 50S ribosomal protein L13 -
  GII23_RS07315 (GII23_07295) rpsI 1580599..1580991 (+) 393 WP_043221690.1 30S ribosomal protein S9 -
  GII23_RS07320 (GII23_07300) petA 1581246..1581839 (+) 594 WP_041104007.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44097.03 Da        Isoelectric Point: 9.9043

>NTDB_id=398712 GII23_RS07285 WP_165562833.1 1576061..1577281(+) (pilC) [Stutzerimonas balearica strain EC28]
MAEKALKTSVFTWEGTDRKGGKVKGELAGQSPALVKAQLRKQGINPLKVRKKAVSLFGSGKKIKPMDIALFTRQMATMMK
AGVPLLQAFDIIGEGFDNPNMRKMVDEVKQEVAAGNSFAGSLRKKPQYFDDLYCNLVESGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVILVAVIVSAILLIKVVPQFENVFHGFGAELPAFTMMVIGLSRWLQEWWYAALAALFAIAFLFK
HARQRSEKLRDGLDRALLKMPIVGDILYKSALARYARTLSTTFAAGVPLVDALGSVAGAAGNVVFRNAVMKIRDEVSSGV
QLNFSMRGTGVFPAMAVQMAAIGEESGALDEMLDKLASFYEAEVDNMVDNLTTLMEPLIMAVLGVLVGGLIIAMYLPIFQ
LGGVIG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=398712 GII23_RS07285 WP_165562833.1 1576061..1577281(+) (pilC) [Stutzerimonas balearica strain EC28]
ATGGCGGAAAAAGCGTTGAAAACCAGCGTGTTCACCTGGGAAGGAACCGACAGGAAAGGCGGCAAGGTCAAGGGTGAGCT
CGCTGGGCAAAGCCCGGCTTTGGTCAAGGCGCAACTGCGTAAGCAGGGCATCAATCCGCTCAAGGTTCGCAAGAAAGCGG
TGTCCCTGTTCGGCTCCGGTAAAAAGATCAAGCCGATGGACATCGCTCTGTTCACTCGGCAAATGGCGACCATGATGAAG
GCCGGCGTGCCGCTGCTGCAGGCTTTCGACATCATTGGCGAGGGCTTCGACAACCCCAACATGCGCAAGATGGTCGATGA
GGTGAAGCAGGAAGTCGCTGCTGGTAACAGCTTCGCTGGTTCGCTGCGCAAGAAGCCGCAGTATTTCGACGATCTGTATT
GCAACCTGGTCGAGTCCGGGGAGCAATCGGGTGCCTTGGAGACGCTGCTGGATCGCGTGGCGACCTACAAGGAAAAAACC
GAAGCGCTGAAGGCGAAAATAAAAAAGGCGATGACTTATCCTATCGCGGTAATCCTCGTGGCGGTTATTGTTTCGGCAAT
TTTGCTAATCAAGGTTGTGCCGCAGTTTGAAAATGTCTTTCATGGGTTTGGCGCTGAGTTGCCAGCATTCACTATGATGG
TGATTGGTCTTTCTCGTTGGCTGCAGGAGTGGTGGTACGCTGCCCTTGCAGCGCTTTTTGCTATTGCGTTCTTGTTTAAG
CATGCCCGCCAGCGCTCCGAAAAGCTTCGGGATGGTTTGGACCGGGCACTGCTTAAAATGCCTATTGTAGGGGATATTCT
TTATAAGTCGGCATTGGCTAGATATGCGCGGACGCTTTCAACAACGTTTGCTGCAGGCGTACCTTTGGTGGATGCCCTCG
GTTCCGTTGCCGGCGCGGCGGGTAATGTTGTGTTTCGTAATGCGGTCATGAAGATCCGTGACGAGGTGTCTTCGGGTGTG
CAGCTTAATTTCTCCATGCGCGGCACCGGAGTGTTTCCAGCGATGGCTGTTCAGATGGCTGCTATTGGTGAGGAGTCCGG
AGCGCTAGATGAAATGCTAGATAAGCTTGCAAGCTTCTATGAGGCAGAGGTCGATAATATGGTTGATAACCTTACAACAC
TCATGGAGCCCTTGATCATGGCAGTTCTTGGTGTGCTGGTTGGGGGGTTGATTATTGCAATGTACTTGCCCATCTTCCAG
TTGGGTGGGGTTATCGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

80.741

99.754

0.805
  pilC Acinetobacter baylyi ADP1

60.591

100

0.606
  pilC Acinetobacter baumannii D1279779

59.753

99.754

0.596
  pilC Legionella pneumophila strain ERS1305867

52.525

97.537

0.512
  pilG Neisseria gonorrhoeae MS11

45.906

99.261

0.456
  pilG Neisseria meningitidis 44/76-A

45.906

99.261

0.456
  pilC Vibrio cholerae strain A1552

42.857

100

0.429
  pilC Vibrio campbellii strain DS40M4

41.855

98.276

0.411
  pilC Thermus thermophilus HB27

36.296

99.754

0.362

Multiple sequence alignment