Detailed information NTG0398713

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GII23_RS07290
• Genome accession: NZ_CP045858
• Coordinates: 1577287..1578150 (+)
• Length: 287 a.a.
• NCBI ID: WP_165562834.1
• Uniprot ID: -
• Organism: Stutzerimonas balearica strain EC28
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1572287..1583150

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GII23_RS07265 (GII23_07245)	-	1572499..1573299 (-)	801	WP_165562829.1	ABC transporter permease	-
GII23_RS07270 (GII23_07250)	-	1573357..1573812 (-)	456	WP_165562830.1	hypothetical protein	-
GII23_RS22155 (GII23_07255)	pilA	1573830..1574015 (-)	186	WP_165562831.1	type IV pilin protein	Machinery gene
GII23_RS07280 (GII23_07260)	pilB	1574355..1576058 (+)	1704	WP_165562832.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GII23_RS07285 (GII23_07265)	pilC	1576061..1577281 (+)	1221	WP_165562833.1	type II secretion system F family protein	Machinery gene
GII23_RS07290 (GII23_07270)	pilD	1577287..1578150 (+)	864	WP_165562834.1	A24 family peptidase	Machinery gene
GII23_RS07295 (GII23_07275)	coaE	1578282..1578890 (+)	609	WP_165562835.1	dephospho-CoA kinase	-
GII23_RS07300 (GII23_07280)	yacG	1578887..1579084 (+)	198	WP_102840588.1	DNA gyrase inhibitor YacG	-
GII23_RS07305 (GII23_07285)	-	1579109..1579789 (-)	681	WP_165562836.1	energy-coupling factor ABC transporter permease	-
GII23_RS07310 (GII23_07290)	rplM	1580156..1580584 (+)	429	WP_165562837.1	50S ribosomal protein L13	-
GII23_RS07315 (GII23_07295)	rpsI	1580599..1580991 (+)	393	WP_043221690.1	30S ribosomal protein S9	-
GII23_RS07320 (GII23_07300)	petA	1581246..1581839 (+)	594	WP_041104007.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-
GII23_RS07325 (GII23_07305)	-	1581839..1583050 (+)	1212	WP_041104009.1	cytochrome bc complex cytochrome b subunit	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 32104.19 Da
• Isoelectric Point: 7.9130

>NTDB_id=398713 GII23_RS07290 WP_165562834.1 1577287..1578150(+) (pilD) [Stutzerimonas balearica strain EC28]
MFDYLASHVLAFVLSVAVLGLLVGSFLNVLIYRLPVMMQREWRVQAREFLELPCEPVGERFNLLLPNSRCPHCAHRIRAW
ENVPLISWLLLRGKCSSCRAPISCRYPLVELACGVLSGYVAWHFGFSWQAAMMLLLTWGLLAMSMIDVDHQLLPDSLVLP
LLWLGLIVNHFGLFTSLESALWGAVTGYLSLWSVYWLFKLATGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGAV
LGSILLKVQRAESGTPIPFGPYLAIAGWIALLWGDRITESYLQFARF

Nucleotide

• Length: 864 bp

>NTDB_id=398713 GII23_RS07290 WP_165562834.1 1577287..1578150(+) (pilD) [Stutzerimonas balearica strain EC28]
ATGTTTGATTACCTGGCCAGCCATGTGCTGGCCTTTGTTTTGTCTGTAGCAGTGCTCGGCCTGCTGGTTGGCAGTTTCCT
TAACGTCCTCATCTACCGGTTGCCGGTGATGATGCAGCGCGAATGGCGGGTGCAGGCGAGAGAATTTCTTGAGCTGCCAT
GCGAACCGGTCGGCGAACGATTCAACCTGTTGCTACCGAATTCGCGCTGTCCGCATTGCGCTCATCGAATCCGCGCATGG
GAAAACGTTCCGCTGATCAGTTGGCTGTTGTTGCGTGGCAAGTGTTCATCCTGCCGGGCGCCGATCAGTTGTCGTTACCC
GTTGGTGGAGCTGGCATGCGGTGTGCTCTCCGGGTATGTGGCGTGGCATTTCGGCTTTTCCTGGCAGGCCGCCATGATGC
TGTTGCTGACCTGGGGTCTGCTGGCAATGAGCATGATCGATGTCGATCATCAGTTGTTGCCTGACTCGCTCGTACTGCCC
TTGTTGTGGCTGGGGTTGATCGTTAACCACTTCGGCTTGTTCACTTCGCTGGAAAGTGCGCTGTGGGGGGCGGTGACGGG
TTATCTGAGTCTTTGGTCGGTGTACTGGCTTTTCAAGCTCGCCACCGGCAAAGAGGGCATGGGCTACGGCGACTTCAAGC
TGTTGGCGATGCTTGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGCTTACCATTCTGTTGTCGTCAGTGGTCGGAGCGGTG
CTAGGTTCCATTCTTTTGAAGGTTCAGCGTGCAGAAAGCGGCACGCCCATTCCCTTTGGCCCCTATCTGGCGATCGCTGG
GTGGATTGCGCTTCTCTGGGGTGACAGGATCACCGAAAGCTATCTGCAATTCGCCCGCTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.311	95.122	0.526
pilD	Vibrio campbellii strain DS40M4	54.579	95.122	0.519
pilD	Acinetobacter baumannii D1279779	51.601	97.909	0.505
pilD	Acinetobacter nosocomialis M2	51.601	97.909	0.505
pilD	Neisseria gonorrhoeae MS11	53.817	91.289	0.491