Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACAV_RS01395 Genome accession   NC_015138
Coordinates   323804..325357 (-) Length   517 a.a.
NCBI ID   WP_013592795.1    Uniprot ID   F0Q2V0
Organism   Paracidovorax avenae ATCC 19860     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 318804..330357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAV_RS01380 (Acav_0283) - 319243..320229 (-) 987 WP_013592792.1 tripartite tricarboxylate transporter substrate binding protein BugE -
  ACAV_RS01385 (Acav_0284) - 320532..322355 (+) 1824 WP_013592793.1 ATP-binding protein -
  ACAV_RS01390 (Acav_0285) - 322386..323774 (+) 1389 WP_013592794.1 sigma-54 dependent transcriptional regulator -
  ACAV_RS01395 (Acav_0286) comM 323804..325357 (-) 1554 WP_013592795.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACAV_RS01400 (Acav_0287) - 325603..326328 (+) 726 WP_013592796.1 TorF family putative porin -
  ACAV_RS01405 (Acav_0288) glnK 326381..326719 (+) 339 WP_011793419.1 P-II family nitrogen regulator -
  ACAV_RS01410 (Acav_0289) amt 326772..328208 (+) 1437 WP_013592797.1 ammonium transporter -
  ACAV_RS01415 (Acav_0290) - 328712..329695 (+) 984 WP_013592798.1 SMP-30/gluconolactonase/LRE family protein -
  ACAV_RS01420 (Acav_0291) - 329719..330096 (-) 378 WP_013592799.1 hypothetical protein -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 53760.43 Da        Isoelectric Point: 8.2793

>NTDB_id=39860 ACAV_RS01395 WP_013592795.1 323804..325357(-) (comM) [Paracidovorax avenae ATCC 19860]
MSLALVQSRALLGLQAAAVTVEVHLANGLPSFTLVGLADVEVKEARERVRSALQNAGLEFPHNKKITVNLAPADLPKDSG
RFDLPIALGILAASGQIDGTLLAGHEFAGELSLSGELRPVRGALATSLALRSAGGRARMVLPPGSAEEAALVPGTEVYRA
RHLLDVVARFLPPQAAASAGPGTESATEDGWCRVEGMPPMAAAPADDLADVKGQAAARRALEIAAAGGHGLLMVGPPGSG
KSMLAHRFAGLLPAMSVDEALESAAVASLAGRFTPTAWGARPTAAPHHSCSAVALVGGGSPPRPGEISIAHHGVLFLDEF
PEYARSALEALREPLETGRITIARAARRADFPARFQLVAAMNPCPCGYLGSGQRACRCTPDQIDRYQGKLSGPLLDRIDL
HVEVPALPPDQLLAAAPGEPSASVRERVAAARGRALARQGKPNQALQGREIDVQASLQDDAARFLQSAAARLGWSARSTH
RTLKVARTIADLAGEASVGPAHVAEAVQYRRVLRQAA

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=39860 ACAV_RS01395 WP_013592795.1 323804..325357(-) (comM) [Paracidovorax avenae ATCC 19860]
ATGAGTCTTGCCTTGGTGCAGAGCCGCGCGCTGCTGGGCCTGCAGGCCGCGGCCGTTACGGTGGAAGTGCATCTGGCCAA
CGGCCTGCCCAGCTTCACGCTCGTGGGCCTCGCGGACGTGGAAGTGAAGGAGGCGCGCGAGCGCGTGCGCTCGGCACTGC
AGAACGCGGGGCTGGAATTCCCCCACAACAAGAAGATCACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGACTCCGGC
CGCTTCGACCTGCCGATCGCCCTGGGCATCCTGGCCGCCAGCGGCCAGATCGACGGCACGCTGCTGGCCGGCCATGAGTT
CGCGGGCGAGCTGTCGCTGTCCGGCGAACTCCGCCCGGTGCGGGGCGCGCTCGCCACCAGCCTCGCCCTGCGGTCCGCCG
GCGGCCGCGCCCGCATGGTGCTGCCGCCCGGCAGCGCCGAAGAGGCGGCCCTGGTGCCCGGCACCGAGGTATACCGGGCC
CGGCACCTGCTGGACGTGGTGGCGCGGTTCCTTCCGCCCCAGGCCGCGGCCAGCGCCGGCCCCGGCACCGAAAGCGCCAC
CGAAGACGGCTGGTGCCGGGTGGAGGGCATGCCGCCGATGGCCGCGGCGCCCGCCGACGACCTTGCCGACGTGAAGGGCC
AGGCCGCCGCCCGGCGCGCGCTGGAGATCGCCGCCGCAGGCGGCCATGGCCTGCTCATGGTGGGCCCGCCGGGTTCGGGC
AAGTCGATGCTGGCACACCGGTTCGCGGGCCTGCTGCCGGCGATGTCGGTGGACGAGGCGCTGGAAAGCGCCGCGGTGGC
CAGCCTGGCCGGGCGCTTCACGCCGACCGCATGGGGAGCCCGGCCGACGGCTGCGCCACACCACTCCTGCAGTGCAGTGG
CCCTGGTGGGAGGCGGTTCACCACCGCGCCCCGGAGAGATATCGATCGCCCACCACGGAGTGCTCTTCCTGGACGAATTC
CCCGAATACGCCCGCAGCGCCCTGGAAGCGCTGCGCGAGCCGCTGGAGACGGGCCGCATCACGATCGCACGGGCCGCACG
CCGTGCGGATTTCCCGGCGCGCTTCCAGCTCGTCGCGGCGATGAACCCCTGCCCCTGCGGCTACCTGGGCTCCGGCCAGC
GCGCCTGCCGCTGCACGCCCGACCAGATCGACCGCTACCAGGGCAAGCTGAGCGGCCCGCTGCTGGACCGCATCGACCTG
CATGTGGAGGTGCCCGCCCTTCCCCCTGACCAGCTGCTGGCCGCCGCGCCCGGCGAACCATCGGCCAGCGTGCGCGAGCG
CGTCGCCGCCGCGCGCGGGCGCGCCCTGGCCCGGCAGGGCAAGCCCAACCAGGCCCTGCAGGGGCGCGAGATCGATGTGC
AGGCCAGCCTGCAGGACGATGCCGCCCGGTTCCTGCAATCGGCCGCCGCCCGGCTGGGGTGGTCGGCGCGCAGCACCCAC
CGCACGCTCAAGGTGGCCCGCACCATCGCCGACCTGGCGGGCGAGGCATCCGTCGGGCCCGCGCACGTGGCCGAGGCGGT
GCAGTACCGGCGCGTGCTGCGCCAGGCAGCGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(418-510)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(207-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0Q2V0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.008

100

0.526
  comM Vibrio campbellii strain DS40M4

51.533

100

0.52
  comM Haemophilus influenzae Rd KW20

51.257

100

0.513
  comM Glaesserella parasuis strain SC1401

50.195

99.42

0.499
  comM Legionella pneumophila str. Paris

46.756

100

0.474
  comM Legionella pneumophila strain ERS1305867

46.756

100

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.278

100

0.424

Multiple sequence alignment