Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   GCU76_RS20180 Genome accession   NZ_CP045425
Coordinates   3735313..3735654 (-) Length   113 a.a.
NCBI ID   WP_017696582.1    Uniprot ID   A0AAX3RQL5
Organism   Bacillus subtilis strain JAAA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3730313..3740654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS20160 hepAB 3730555..3733323 (+) 2769 WP_014481139.1 DEAD/DEAH box helicase -
  GCU76_RS20170 ywpJ 3733449..3734306 (-) 858 WP_017696583.1 phosphatase YwpJ -
  GCU76_RS20175 glcR 3734312..3735088 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  GCU76_RS20180 ssbB 3735313..3735654 (-) 342 WP_017696582.1 single-stranded DNA-binding protein SsbB Machinery gene
  GCU76_RS20185 ywpG 3735731..3736114 (-) 384 WP_014478204.1 DynA interaction protein YwpG -
  GCU76_RS20190 ywpF 3736289..3736699 (+) 411 WP_003227794.1 YwpF-like family protein -
  GCU76_RS20200 - 3736851..3738097 (+) 1247 Protein_3892 IS256-like element ISBsu2 family transposase -
  GCU76_RS20205 - 3738180..3738571 (-) 392 Protein_3893 class A sortase -
  GCU76_RS23265 - 3738558..3738923 (-) 366 WP_348774629.1 prealbumin-like fold domain-containing protein -
  GCU76_RS20215 ywpD 3738831..3739667 (+) 837 WP_026113665.1 histidine kinase -
  GCU76_RS20220 mscL 3739714..3740109 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  GCU76_RS20225 fabZ 3740182..3740607 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12461.12 Da        Isoelectric Point: 8.4694

>NTDB_id=394018 GCU76_RS20180 WP_017696582.1 3735313..3735654(-) (ssbB) [Bacillus subtilis strain JAAA]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTQVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=394018 GCU76_RS20180 WP_017696582.1 3735313..3735654(-) (ssbB) [Bacillus subtilis strain JAAA]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACACAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

98.23

100

0.982
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.208

93.805

0.593
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.283

93.805

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.34

93.805

0.416
  ssbA Streptococcus mutans UA159

43.396

93.805

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

43.396

93.805

0.407
  ssbB/cilA Streptococcus pneumoniae D39

43.396

93.805

0.407
  ssbB/cilA Streptococcus pneumoniae R6

43.396

93.805

0.407
  ssbB/cilA Streptococcus mitis SK321

43.396

93.805

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

40.952

92.92

0.381

Multiple sequence alignment