Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | GYMC52_RS16605 | Genome accession | NC_014915 |
| Coordinates | 3356656..3357015 (-) | Length | 119 a.a. |
| NCBI ID | WP_011232661.1 | Uniprot ID | U2WRT9 |
| Organism | Geobacillus sp. Y412MC52 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3351656..3362015
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GYMC52_RS16585 (GYMC52_3315) | - | 3352838..3353617 (-) | 780 | WP_013524705.1 | hypothetical protein | - |
| GYMC52_RS16590 (GYMC52_3316) | - | 3353902..3355254 (-) | 1353 | WP_013524706.1 | peptidoglycan-binding protein | - |
| GYMC52_RS16595 (GYMC52_3317) | - | 3355409..3355918 (-) | 510 | WP_013524707.1 | hypothetical protein | - |
| GYMC52_RS16600 (GYMC52_3318) | - | 3356128..3356535 (+) | 408 | WP_013524708.1 | helix-turn-helix domain-containing protein | - |
| GYMC52_RS16605 (GYMC52_3319) | ssbB | 3356656..3357015 (-) | 360 | WP_011232661.1 | single-stranded DNA-binding protein | Machinery gene |
| GYMC52_RS16610 (GYMC52_3320) | - | 3357285..3357725 (+) | 441 | WP_013524709.1 | YwpF-like family protein | - |
| GYMC52_RS16615 (GYMC52_3321) | - | 3357782..3358411 (-) | 630 | WP_013524710.1 | class D sortase | - |
| GYMC52_RS16620 (GYMC52_3322) | - | 3358418..3359317 (-) | 900 | WP_013524711.1 | processed acidic surface protein | - |
| GYMC52_RS16630 (GYMC52_3323) | - | 3359699..3361075 (-) | 1377 | WP_013524712.1 | aspartate kinase | - |
| GYMC52_RS16635 (GYMC52_3324) | - | 3361342..3361776 (-) | 435 | WP_011232666.1 | DUF1284 domain-containing protein | - |
Sequence
Protein
Download Length: 119 a.a. Molecular weight: 13427.38 Da Isoelectric Point: 9.8293
>NTDB_id=39391 GYMC52_RS16605 WP_011232661.1 3356656..3357015(-) (ssbB) [Geobacillus sp. Y412MC52]
MRQHMINQVVLVGRLTKDPELRYTAEGAAVATVTLAVARNFRNAEGGIDADFVPCVLWRKTAEHTANYCRKGSMVAVTGR
IQTRRYDKKDGQRVYVTEVVAESVQFLHSGKKPEWPEHV
MRQHMINQVVLVGRLTKDPELRYTAEGAAVATVTLAVARNFRNAEGGIDADFVPCVLWRKTAEHTANYCRKGSMVAVTGR
IQTRRYDKKDGQRVYVTEVVAESVQFLHSGKKPEWPEHV
Nucleotide
Download Length: 360 bp
>NTDB_id=39391 GYMC52_RS16605 WP_011232661.1 3356656..3357015(-) (ssbB) [Geobacillus sp. Y412MC52]
ATGCGCCAACACATGATCAACCAAGTCGTGTTGGTCGGCCGGTTGACGAAAGATCCCGAGCTTCGCTACACGGCCGAAGG
GGCTGCCGTCGCGACTGTCACGCTGGCGGTGGCGAGAAATTTCCGCAACGCGGAAGGGGGGATTGACGCCGATTTCGTTC
CATGCGTTTTATGGCGGAAAACGGCGGAACATACCGCCAATTATTGCCGAAAAGGATCGATGGTGGCGGTGACGGGGAGA
ATCCAAACGCGCCGCTACGATAAAAAAGACGGTCAACGCGTCTATGTCACCGAAGTCGTCGCGGAGTCCGTCCAATTTCT
CCACTCTGGAAAGAAACCAGAATGGCCGGAGCACGTATAG
ATGCGCCAACACATGATCAACCAAGTCGTGTTGGTCGGCCGGTTGACGAAAGATCCCGAGCTTCGCTACACGGCCGAAGG
GGCTGCCGTCGCGACTGTCACGCTGGCGGTGGCGAGAAATTTCCGCAACGCGGAAGGGGGGATTGACGCCGATTTCGTTC
CATGCGTTTTATGGCGGAAAACGGCGGAACATACCGCCAATTATTGCCGAAAAGGATCGATGGTGGCGGTGACGGGGAGA
ATCCAAACGCGCCGCTACGATAAAAAAGACGGTCAACGCGTCTATGTCACCGAAGTCGTCGCGGAGTCCGTCCAATTTCT
CCACTCTGGAAAGAAACCAGAATGGCCGGAGCACGTATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
67.961 |
86.555 |
0.588 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.385 |
87.395 |
0.571 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60 |
88.235 |
0.529 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
48.571 |
88.235 |
0.429 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
46.667 |
88.235 |
0.412 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
46.667 |
88.235 |
0.412 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
45.714 |
88.235 |
0.403 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
45.714 |
88.235 |
0.403 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
45.714 |
88.235 |
0.403 |
| ssbB/cilA | Streptococcus mitis SK321 |
45.714 |
88.235 |
0.403 |
| ssbA | Streptococcus mutans UA159 |
45.714 |
88.235 |
0.403 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
42.308 |
87.395 |
0.37 |