Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | GBK02_RS14845 | Genome accession | NZ_CP045202 |
| Coordinates | 3069914..3070318 (-) | Length | 134 a.a. |
| NCBI ID | WP_203467383.1 | Uniprot ID | A0A974Y8R7 |
| Organism | Dechloromonas sp. TW-R-39-2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3064914..3075318
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GBK02_RS14835 (GBK02_14760) | - | 3066649..3068133 (+) | 1485 | WP_203467381.1 | CYTH and CHAD domain-containing protein | - |
| GBK02_RS14840 (GBK02_14765) | - | 3068187..3069797 (-) | 1611 | WP_203467382.1 | PglL family O-oligosaccharyltransferase | - |
| GBK02_RS14845 (GBK02_14770) | pilE | 3069914..3070318 (-) | 405 | WP_203467383.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| GBK02_RS14850 (GBK02_14775) | - | 3070523..3072109 (-) | 1587 | WP_203467384.1 | HD family phosphohydrolase | - |
| GBK02_RS14855 (GBK02_14780) | - | 3072153..3073184 (-) | 1032 | WP_203467385.1 | cyclic nucleotide-binding domain-containing protein | - |
| GBK02_RS14860 (GBK02_14785) | - | 3073186..3073953 (-) | 768 | WP_203467386.1 | 3',5'-cyclic-nucleotide phosphodiesterase | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 13844.07 Da Isoelectric Point: 8.4935
>NTDB_id=392670 GBK02_RS14845 WP_203467383.1 3069914..3070318(-) (pilE) [Dechloromonas sp. TW-R-39-2]
MKRVQQGFTLIELMIVVAIIGILAAVALPAYQDYTNRAKASEVILAASGARTCVTEGVSTNGASLLDQCATGFVATKYAK
TLTVNATTGAIQVKGFILAADDTTINLTPTISGNAITGWGCTGTPSKWMPASCK
MKRVQQGFTLIELMIVVAIIGILAAVALPAYQDYTNRAKASEVILAASGARTCVTEGVSTNGASLLDQCATGFVATKYAK
TLTVNATTGAIQVKGFILAADDTTINLTPTISGNAITGWGCTGTPSKWMPASCK
Nucleotide
Download Length: 405 bp
>NTDB_id=392670 GBK02_RS14845 WP_203467383.1 3069914..3070318(-) (pilE) [Dechloromonas sp. TW-R-39-2]
ATGAAGCGTGTTCAACAAGGTTTTACCCTGATCGAACTGATGATCGTTGTCGCCATTATCGGTATCTTGGCGGCCGTCGC
TCTGCCGGCTTACCAGGATTACACCAATCGAGCCAAAGCATCTGAAGTTATTTTGGCAGCAAGTGGCGCACGTACCTGTG
TAACCGAAGGTGTATCTACCAATGGAGCGAGTTTGTTGGATCAGTGTGCCACAGGTTTTGTTGCAACGAAATATGCTAAA
ACTTTGACTGTTAATGCAACGACAGGTGCGATTCAAGTTAAGGGATTTATTCTTGCAGCGGATGACACAACCATCAACCT
GACTCCAACAATTTCTGGTAATGCAATTACAGGCTGGGGCTGTACGGGAACTCCATCCAAATGGATGCCAGCTTCCTGCA
AGTGA
ATGAAGCGTGTTCAACAAGGTTTTACCCTGATCGAACTGATGATCGTTGTCGCCATTATCGGTATCTTGGCGGCCGTCGC
TCTGCCGGCTTACCAGGATTACACCAATCGAGCCAAAGCATCTGAAGTTATTTTGGCAGCAAGTGGCGCACGTACCTGTG
TAACCGAAGGTGTATCTACCAATGGAGCGAGTTTGTTGGATCAGTGTGCCACAGGTTTTGTTGCAACGAAATATGCTAAA
ACTTTGACTGTTAATGCAACGACAGGTGCGATTCAAGTTAAGGGATTTATTCTTGCAGCGGATGACACAACCATCAACCT
GACTCCAACAATTTCTGGTAATGCAATTACAGGCTGGGGCTGTACGGGAACTCCATCCAAATGGATGCCAGCTTCCTGCA
AGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
34.921 |
100 |
0.493 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
48.148 |
100 |
0.485 |
| pilA2 | Legionella pneumophila str. Paris |
48.148 |
100 |
0.485 |
| comP | Acinetobacter baylyi ADP1 |
43.056 |
100 |
0.463 |
| pilA/pilA1 | Eikenella corrodens VA1 |
40.789 |
100 |
0.463 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
45.385 |
97.015 |
0.44 |
| pilA | Haemophilus influenzae 86-028NP |
38.889 |
100 |
0.418 |
| pilE | Neisseria gonorrhoeae MS11 |
40.441 |
100 |
0.41 |
| pilA | Haemophilus influenzae Rd KW20 |
35.57 |
100 |
0.396 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
36.111 |
100 |
0.388 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
36.691 |
100 |
0.381 |