Detailed information NTG0391898

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GBN68_RS01420
• Genome accession: NZ_CP045101
• Coordinates: 303564..304424 (-)
• Length: 286 a.a.
• NCBI ID: WP_234955116.1
• Uniprot ID: -
• Organism: Acinetobacter johnsonii strain AJ210
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 298564..309424

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GBN68_RS01395 (GBN68_01395)	recN	298723..300384 (-)	1662	WP_234955112.1	DNA repair protein RecN	-
GBN68_RS01400 (GBN68_01400)	-	300778..301101 (+)	324	WP_004692718.1	pyrimidine/purine nucleoside phosphorylase	-
GBN68_RS01405 (GBN68_01405)	rlmB	301244..301993 (+)	750	WP_004692717.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
GBN68_RS01410 (GBN68_01410)	-	302029..302944 (+)	916	Protein_265	DMT family transporter	-
GBN68_RS01415 (GBN68_01415)	coaE	302958..303557 (-)	600	WP_234955114.1	dephospho-CoA kinase	-
GBN68_RS01420 (GBN68_01420)	pilD	303564..304424 (-)	861	WP_234955116.1	prepilin peptidase	Machinery gene
GBN68_RS01425 (GBN68_01425)	pilC	304424..305650 (-)	1227	WP_234955119.1	type II secretion system F family protein	Machinery gene
GBN68_RS01430 (GBN68_01430)	pilB	305681..307393 (-)	1713	WP_234955121.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GBN68_RS01435 (GBN68_01435)	tpiA	307673..308464 (+)	792	WP_234955123.1	triose-phosphate isomerase	-
GBN68_RS01440 (GBN68_01440)	secG	308478..308807 (+)	330	WP_168159357.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31936.36 Da
• Isoelectric Point: 8.0620

>NTDB_id=391898 GBN68_RS01420 WP_234955116.1 303564..304424(-) (pilD) [Acinetobacter johnsonii strain AJ210]
MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLLHPEQPIIDETKLTLSKPASTCPKCKSA
IHWYQNIPVMSWLLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR
YTLTLAGLGLGVNSYAIYTTPTAAIWGYIIGFLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

• Length: 861 bp

>NTDB_id=391898 GBN68_RS01420 WP_234955116.1 303564..304424(-) (pilD) [Acinetobacter johnsonii strain AJ210]
ATGCAAGAAATAATTTCCTATCTTATCAATACTCCAATGGCGCTTTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATCGG
TAGTTTTCTGAATGTGGTGATCTATCGCACTCCAAAAATGATGGAACAAGAATGGCGCACCGACTGCCAACTTCTGCTTC
ATCCTGAGCAGCCAATTATTGATGAAACGAAGCTCACATTGAGTAAGCCTGCCTCAACCTGTCCAAAATGCAAAAGTGCC
ATACACTGGTATCAAAATATCCCTGTGATGAGTTGGTTACTGCTACGAGGAAAGTGTGGCACTTGTCATAACCCGATCAG
CATTCGCTACCCTGCGATTGAGCTCCTGACCGCCATTTGTGCATTGGTCGTGGTTGCAGTCTTTGGCCCAACAATCCAAA
TGCTATTCGGTCTCGTACTCACTTACATTTTAATCGCCTTAACTTTTATTGATTTTGACACTCAACTTTTACCTGATCGC
TATACCCTCACCCTTGCAGGTCTAGGTTTAGGGGTCAATAGTTATGCGATTTACACCACACCGACAGCGGCCATTTGGGG
TTACATCATTGGCTTTTTATGCTTATGGATTGTCTACTATCTGTTTAAGCTCATCACAGGTAAGGAAGGTATGGGTTATG
GCGACTTTAAGTTACTTGCTGCTTTAGGCGCATGGATGGGCCCTTTGCTGCTGCCGCTGATTGTGCTACTTTCCTCTTTC
GTAGGTGCCATTATCGGCATCATTCTGCTCAAAGTGCGCAAAGAAAATCAGCCTTTTGCTTTTGGCCCATATATTGCCAT
CGCAGGATGGATTGCCTTTTTATGGGGTGAGCAAATTATGAAAATATATTTAGGCAATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	79.649	99.65	0.794
pilD	Acinetobacter nosocomialis M2	79.649	99.65	0.794
pilD	Vibrio cholerae strain A1552	54.478	93.706	0.51
pilD	Vibrio campbellii strain DS40M4	52.06	93.357	0.486
pilD	Neisseria gonorrhoeae MS11	46.154	95.455	0.441