Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   F9800_RS16660 Genome accession   NZ_CP045030
Coordinates   2068187..2068522 (+) Length   111 a.a.
NCBI ID   WP_000982011.1    Uniprot ID   A0A9W3JLL1
Organism   Bacillus thuringiensis strain JW-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2063187..2073522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9800_RS16635 (F9800_16665) - 2063377..2064204 (-) 828 WP_000499713.1 hypothetical protein -
  F9800_RS16640 (F9800_16670) - 2064314..2064961 (+) 648 WP_000165966.1 HD domain-containing protein -
  F9800_RS16645 (F9800_16675) - 2064958..2066853 (+) 1896 WP_000783172.1 ABC-F family ATP-binding cassette domain-containing protein -
  F9800_RS16650 (F9800_16680) - 2066929..2067660 (+) 732 WP_001260655.1 Bax inhibitor-1/YccA family membrane protein -
  F9800_RS16655 (F9800_16685) - 2067771..2068025 (+) 255 WP_014895230.1 DUF4318 domain-containing protein -
  F9800_RS16660 (F9800_16690) ssbA 2068187..2068522 (+) 336 WP_000982011.1 single-stranded DNA-binding protein Machinery gene
  F9800_RS16665 (F9800_16695) - 2068855..2069328 (+) 474 WP_000026686.1 Imm26 family immunity protein -
  F9800_RS16670 (F9800_16700) - 2069623..2070750 (+) 1128 WP_000692582.1 conserved virulence factor C family protein -
  F9800_RS16675 (F9800_16705) - 2070754..2071137 (+) 384 WP_000634874.1 thiol-disulfide oxidoreductase DCC family protein -
  F9800_RS16680 (F9800_16710) - 2071221..2071655 (+) 435 WP_000063708.1 BrxA/BrxB family bacilliredoxin -
  F9800_RS16685 (F9800_16715) - 2071705..2072481 (+) 777 WP_000637432.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12755.61 Da        Isoelectric Point: 9.4344

>NTDB_id=391322 F9800_RS16660 WP_000982011.1 2068187..2068522(+) (ssbA) [Bacillus thuringiensis strain JW-1]
MMNRVVLIGRLTKEPELYYTKQGVAYARICIAVNRGFRNSLGEQQVDFINCVVWRKSAENVAEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=391322 F9800_RS16660 WP_000982011.1 2068187..2068522(+) (ssbA) [Bacillus thuringiensis strain JW-1]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
AAGAATATGTATTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGCAAATCGGCTGAGAATGTAGCTGAATATTGTAAGAAGGGGTCGCTCGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

95.495

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

95.495

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

100

0.523
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

94.595

0.432
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbB/cilA Streptococcus mitis NCTC 12261

41.818

99.099

0.414
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.818

99.099

0.414
  ssbB/cilA Streptococcus pneumoniae Rx1

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae D39

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae R6

40.909

99.099

0.405
  ssbB/cilA Streptococcus mitis SK321

40.909

99.099

0.405
  ssbA Streptococcus mutans UA159

40.909

99.099

0.405

Multiple sequence alignment