Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   FSA40_RS09295 Genome accession   NZ_CP044493
Coordinates   1830499..1830813 (-) Length   104 a.a.
NCBI ID   WP_002263437.1    Uniprot ID   -
Organism   Streptococcus mutans strain MD     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1825499..1835813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS09255 (FSA40_1859) - 1825582..1826022 (-) 441 WP_002263445.1 hypothetical protein -
  FSA40_RS09260 (FSA40_1860) - 1825991..1826236 (-) 246 WP_002263444.1 helix-turn-helix transcriptional regulator -
  FSA40_RS09265 (FSA40_1861) - 1826789..1827988 (-) 1200 WP_002263443.1 acetate kinase -
  FSA40_RS09270 (FSA40_1862) comYH 1828047..1829000 (-) 954 WP_002264244.1 class I SAM-dependent methyltransferase Machinery gene
  FSA40_RS09275 (FSA40_1863) comYG 1829055..1829444 (-) 390 WP_002263441.1 competence type IV pilus minor pilin ComGG Machinery gene
  FSA40_RS09280 (FSA40_1864) comYF 1829422..1829856 (-) 435 WP_151416443.1 competence type IV pilus minor pilin ComGF Machinery gene
  FSA40_RS09285 (FSA40_1865) comYE 1829843..1830136 (-) 294 WP_002263439.1 competence type IV pilus minor pilin ComGE Machinery gene
  FSA40_RS09290 (FSA40_1866) comYD 1830108..1830512 (-) 405 WP_002264246.1 competence type IV pilus minor pilin ComGD Machinery gene
  FSA40_RS09295 (FSA40_1867) comYC 1830499..1830813 (-) 315 WP_002263437.1 competence type IV pilus major pilin ComGC Machinery gene
  FSA40_RS09300 (FSA40_1868) comYB 1830813..1831844 (-) 1032 WP_255262721.1 competence type IV pilus assembly protein ComGB Machinery gene
  FSA40_RS09305 (FSA40_1869) comYA 1831780..1832721 (-) 942 WP_151416444.1 competence type IV pilus ATPase ComGA Machinery gene
  FSA40_RS09310 (FSA40_1870) - 1832851..1833234 (-) 384 WP_002263434.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11591.60 Da        Isoelectric Point: 10.2206

>NTDB_id=390400 FSA40_RS09295 WP_002263437.1 1830499..1830813(-) (comYC) [Streptococcus mutans strain MD]
MKKIKRVSVRAFTLIEMLVVLLIISILLLLFVPNLTKQKDKVKDTGGSAVVKVVESQAELYELNKTDSATLSKLVASGDI
TQEQANSYKDYYAKHPSKTRHVAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=390400 FSA40_RS09295 WP_002263437.1 1830499..1830813(-) (comYC) [Streptococcus mutans strain MD]
ATGAAAAAGATCAAGAGAGTCAGTGTACGGGCTTTTACGCTTATAGAAATGTTAGTAGTTCTTCTCATTATTAGTATTCT
TTTACTATTATTTGTTCCTAATTTAACTAAGCAAAAAGATAAGGTAAAAGATACTGGCGGTTCTGCCGTGGTTAAAGTTG
TAGAAAGTCAGGCTGAGCTTTATGAGCTTAATAAAACCGATTCTGCTACTCTTTCTAAATTAGTAGCTAGTGGTGATATT
ACACAAGAACAGGCAAATTCATACAAGGATTACTATGCAAAACACCCAAGTAAAACACGGCATGTCGCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

100

100

1
  comYC Streptococcus mutans UA159

100

100

1
  comYC Streptococcus gordonii str. Challis substr. CH1

71.429

100

0.721
  comGC/cglC Streptococcus mitis SK321

66.667

95.192

0.635
  comGC/cglC Streptococcus mitis NCTC 12261

69.565

88.462

0.615
  comGC/cglC Streptococcus pneumoniae R6

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae Rx1

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae D39

63.636

95.192

0.606
  comGC/cglC Streptococcus pneumoniae TIGR4

63.636

95.192

0.606
  comGC Lactococcus lactis subsp. cremoris KW2

55.446

97.115

0.538
  comYC Streptococcus suis isolate S10

60.227

84.615

0.51

Multiple sequence alignment