Detailed information NTG0390399

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: FSA40_RS09290
• Genome accession: NZ_CP044493
• Coordinates: 1830108..1830512 (-)
• Length: 134 a.a.
• NCBI ID: WP_002264246.1
• Uniprot ID: -
• Organism: Streptococcus mutans strain MD
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1825108..1835512

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FSA40_RS09255 (FSA40_1859)	-	1825582..1826022 (-)	441	WP_002263445.1	hypothetical protein	-
FSA40_RS09260 (FSA40_1860)	-	1825991..1826236 (-)	246	WP_002263444.1	helix-turn-helix transcriptional regulator	-
FSA40_RS09265 (FSA40_1861)	-	1826789..1827988 (-)	1200	WP_002263443.1	acetate kinase	-
FSA40_RS09270 (FSA40_1862)	comYH	1828047..1829000 (-)	954	WP_002264244.1	class I SAM-dependent methyltransferase	Machinery gene
FSA40_RS09275 (FSA40_1863)	comYG	1829055..1829444 (-)	390	WP_002263441.1	competence type IV pilus minor pilin ComGG	Machinery gene
FSA40_RS09280 (FSA40_1864)	comYF	1829422..1829856 (-)	435	WP_151416443.1	competence type IV pilus minor pilin ComGF	Machinery gene
FSA40_RS09285 (FSA40_1865)	comYE	1829843..1830136 (-)	294	WP_002263439.1	competence type IV pilus minor pilin ComGE	Machinery gene
FSA40_RS09290 (FSA40_1866)	comYD	1830108..1830512 (-)	405	WP_002264246.1	competence type IV pilus minor pilin ComGD	Machinery gene
FSA40_RS09295 (FSA40_1867)	comYC	1830499..1830813 (-)	315	WP_002263437.1	competence type IV pilus major pilin ComGC	Machinery gene
FSA40_RS09300 (FSA40_1868)	comYB	1830813..1831844 (-)	1032	WP_255262721.1	competence type IV pilus assembly protein ComGB	Machinery gene
FSA40_RS09305 (FSA40_1869)	comYA	1831780..1832721 (-)	942	WP_151416444.1	competence type IV pilus ATPase ComGA	Machinery gene
FSA40_RS09310 (FSA40_1870)	-	1832851..1833234 (-)	384	WP_002263434.1	DUF1033 family protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 15425.73 Da
• Isoelectric Point: 9.2271

>NTDB_id=390399 FSA40_RS09290 WP_002264246.1 1830108..1830512(-) (comYD) [Streptococcus mutans strain MD]
MSRIKAFTLIESLVTLAITSFLILSFSGSITQTFAKVEEHLFFLSFEHLYRDTQKLSVYQRQDMTLILKSEYISNGVEVL
KIPKDVKLERNKTLHFDQAGGNSSLEKLVFQTSDEKRVTYQLYIGSGQYKKTES

Nucleotide

• Length: 405 bp

>NTDB_id=390399 FSA40_RS09290 WP_002264246.1 1830108..1830512(-) (comYD) [Streptococcus mutans strain MD]
ATGTCGCGAATTAAAGCTTTTACGCTTATAGAAAGTTTAGTGACTTTGGCAATTACTAGTTTTTTGATTTTAAGCTTTTC
AGGTAGTATAACTCAAACGTTTGCCAAAGTAGAAGAGCATCTCTTTTTTCTTTCTTTTGAACATCTTTACCGTGACACGC
AAAAACTTAGTGTTTATCAAAGACAAGATATGACTTTAATATTAAAAAGCGAATATATCTCAAATGGTGTTGAAGTACTT
AAAATCCCTAAGGATGTCAAACTAGAGAGGAATAAAACTTTGCACTTTGATCAGGCAGGAGGAAATTCTTCTTTAGAAAA
ACTTGTTTTTCAAACATCTGATGAAAAAAGAGTTACTTATCAATTATATATAGGAAGTGGTCAGTATAAAAAAACAGAAA
GTTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-25)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	99.254	100	0.993
comYD	Streptococcus mutans UA159	99.254	100	0.993
comYD	Streptococcus gordonii str. Challis substr. CH1	50.388	96.269	0.485
comGD/cglD	Streptococcus mitis NCTC 12261	49.612	96.269	0.478
comGD/cglD	Streptococcus pneumoniae Rx1	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae D39	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae R6	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae TIGR4	48.438	95.522	0.463
comGD/cglD	Streptococcus mitis SK321	48.438	95.522	0.463
comGD	Lactococcus lactis subsp. cremoris KW2	39.394	98.507	0.388