Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   LPB220_RS01310 Genome accession   NZ_CP044230
Coordinates   225004..225399 (+) Length   131 a.a.
NCBI ID   WP_021154298.1    Uniprot ID   V8BA04
Organism   Streptococcus sp. LPB0220     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 220004..230399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB220_RS01285 (LPB220_01285) - 220725..222209 (-) 1485 WP_003009791.1 DUF1846 domain-containing protein -
  LPB220_RS01290 (LPB220_01290) pepA 222454..223518 (-) 1065 WP_150905152.1 glutamyl aminopeptidase -
  LPB220_RS01295 (LPB220_01295) - 223662..223952 (+) 291 WP_150905154.1 DUF4651 domain-containing protein -
  LPB220_RS01300 (LPB220_01300) - 223949..224266 (+) 318 WP_013904499.1 thioredoxin family protein -
  LPB220_RS01305 (LPB220_01305) ytpR 224276..224902 (+) 627 WP_150905156.1 YtpR family tRNA-binding protein -
  LPB220_RS01310 (LPB220_01310) ssbB/cilA 225004..225399 (+) 396 WP_021154298.1 single-stranded DNA-binding protein Machinery gene
  LPB220_RS01315 (LPB220_01315) - 225589..226572 (+) 984 WP_061455740.1 substrate-binding domain-containing protein -
  LPB220_RS01320 (LPB220_01320) - 226572..227888 (+) 1317 WP_049522525.1 sensor histidine kinase -
  LPB220_RS01325 (LPB220_01325) - 227892..228578 (+) 687 WP_003004460.1 response regulator transcription factor -
  LPB220_RS01330 (LPB220_01330) - 228575..229873 (+) 1299 WP_150905158.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14785.83 Da        Isoelectric Point: 5.9328

>NTDB_id=388965 LPB220_RS01310 WP_021154298.1 225004..225399(+) (ssbB/cilA) [Streptococcus sp. LPB0220]
MYNKVILIGRLVAAPELHKTSTDKSVARVTVAVNRRYKDQNGERETDFVNVVVWGKLAETMASYASKGSLISLDGEIRTR
RYEKNGIMQYVTEVLCQSFQLLESRAQRAMRENGGTGDLADIILEEEDLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=388965 LPB220_RS01310 WP_021154298.1 225004..225399(+) (ssbB/cilA) [Streptococcus sp. LPB0220]
ATGTATAATAAAGTTATTTTAATCGGTCGCTTAGTGGCGGCCCCAGAATTGCATAAAACCAGCACAGACAAATCCGTTGC
CCGAGTGACCGTTGCGGTCAATCGTCGCTACAAGGACCAAAACGGGGAGCGAGAGACTGATTTTGTCAATGTCGTTGTCT
GGGGGAAATTGGCTGAAACCATGGCTAGTTATGCCAGCAAAGGGAGTTTGATCTCTTTGGATGGAGAGATTCGGACGCGC
CGCTACGAGAAAAATGGCATCATGCAGTATGTGACAGAGGTCCTCTGCCAAAGTTTTCAGTTATTAGAGAGCCGCGCTCA
GCGAGCGATGCGTGAAAATGGTGGAACGGGAGATTTAGCCGACATCATTTTAGAGGAGGAAGATCTTCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8BA04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

78.626

100

0.786
  ssbB/cilA Streptococcus pneumoniae Rx1

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae D39

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae R6

77.863

100

0.779
  ssbB/cilA Streptococcus mitis NCTC 12261

77.863

100

0.779
  ssbB/cilA Streptococcus mitis SK321

77.863

100

0.779
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB Lactococcus lactis subsp. cremoris KW2

59.292

86.26

0.511
  ssb Latilactobacillus sakei subsp. sakei 23K

44.828

88.55

0.397
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374

Multiple sequence alignment