Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F5I99_RS10010 Genome accession   NZ_CP044222
Coordinates   2174642..2175874 (+) Length   410 a.a.
NCBI ID   WP_151055610.1    Uniprot ID   A0A5J6LDU0
Organism   Nitrincola iocasae strain KXZD1103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2169642..2180874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5I99_RS09995 (F5I99_09995) pilR 2169738..2171141 (-) 1404 WP_151055606.1 sigma-54 dependent transcriptional regulator Regulator
  F5I99_RS10000 (F5I99_10000) - 2171141..2172742 (-) 1602 WP_151055608.1 nitrogen regulation protein NR(II) -
  F5I99_RS10005 (F5I99_10005) pilB 2172906..2174624 (+) 1719 WP_225307369.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F5I99_RS10010 (F5I99_10010) pilC 2174642..2175874 (+) 1233 WP_151055610.1 type II secretion system F family protein Machinery gene
  F5I99_RS10015 (F5I99_10015) pilD 2175890..2176744 (+) 855 WP_151055611.1 A24 family peptidase Machinery gene
  F5I99_RS10020 (F5I99_10020) - 2176776..2177858 (-) 1083 WP_151055613.1 ABC transporter ATP-binding protein -
  F5I99_RS10025 (F5I99_10025) - 2177855..2179471 (-) 1617 WP_225307370.1 iron ABC transporter permease -
  F5I99_RS10030 (F5I99_10030) - 2179578..2180576 (-) 999 WP_151055615.1 iron ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44345.92 Da        Isoelectric Point: 10.0880

>NTDB_id=388892 F5I99_RS10010 WP_151055610.1 2174642..2175874(+) (pilC) [Nitrincola iocasae strain KXZD1103]
MATAAKKEKKKATFQWEGKDRSGNRSKGKIDAENVAIAKSLLRKQGINPNKVSKQSNMSLLGNKNKPVKPLDVAFFTRQM
ATMMKSGVPLLQGLEIVANGTEKLKLKELTYDIRNEVNGGSDFSTALSRHPKQFDDLTCSLVRAGEQSGALETMLDRIAT
YKEKIESLKAKIKKAMTYPAAVVAVGIIVSAILLVKVVPQFQDIFSSFGADLPAFTLFVIGLSDLAQKYWFFALIGFVLL
GFGFTKLMEKSQKFHDAVDRFVLKIPVLGAILYKAAIARFSRTLSTTFAAGVPLVSALDSAAGAAGNVVFRTAIIQVRNG
VSTGQSLQNAVNMTGIFPAMVTQMISIGEEAGSLDTMLDKIASFYEEEVDNAVDNLSSLLEPLIMVVLGTLVGGLVIAMY
LPIFQLGNVV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=388892 F5I99_RS10010 WP_151055610.1 2174642..2175874(+) (pilC) [Nitrincola iocasae strain KXZD1103]
ATGGCTACAGCAGCAAAAAAGGAAAAGAAAAAAGCCACGTTCCAATGGGAAGGCAAGGATCGCAGTGGTAATCGCAGTAA
GGGTAAAATCGACGCTGAAAATGTGGCAATTGCCAAATCATTGTTGCGCAAACAAGGCATCAACCCCAATAAGGTTTCCA
AGCAAAGCAACATGTCGTTGCTGGGCAATAAAAACAAGCCGGTTAAACCGCTCGATGTCGCATTTTTCACCCGCCAGATG
GCGACGATGATGAAATCGGGTGTTCCGCTGTTACAGGGTCTTGAGATTGTTGCCAACGGTACAGAAAAGCTAAAGCTCAA
AGAACTCACGTACGATATACGTAACGAAGTGAATGGCGGCAGTGACTTTTCCACGGCGCTGAGCCGTCACCCGAAACAAT
TTGATGATCTGACCTGTTCTCTGGTCAGGGCTGGCGAACAGTCCGGTGCACTGGAAACCATGCTCGACCGAATTGCCACC
TACAAAGAAAAAATTGAATCACTGAAAGCCAAGATCAAAAAAGCCATGACCTACCCGGCGGCGGTGGTTGCCGTGGGTAT
TATCGTTTCCGCCATTCTACTGGTTAAGGTTGTGCCACAGTTCCAGGACATTTTCAGCAGCTTTGGTGCTGACCTGCCAG
CCTTCACCCTGTTTGTCATTGGTCTGTCAGACCTGGCGCAGAAATACTGGTTTTTCGCCCTGATCGGCTTTGTTCTGCTC
GGTTTTGGGTTTACCAAGCTGATGGAGAAATCACAAAAATTCCATGATGCCGTAGACCGCTTTGTGCTCAAGATTCCGGT
ATTGGGTGCCATCCTGTACAAGGCCGCTATTGCGCGTTTTTCACGCACCCTGTCCACCACCTTTGCCGCTGGTGTTCCGC
TGGTTTCAGCACTCGATTCAGCCGCCGGGGCGGCAGGCAATGTGGTTTTCAGAACAGCGATCATTCAGGTACGTAACGGG
GTATCCACCGGTCAGTCTTTGCAGAATGCGGTTAATATGACGGGCATCTTTCCTGCCATGGTGACGCAAATGATCTCCAT
AGGCGAGGAAGCGGGTTCACTGGATACCATGCTGGACAAAATTGCCTCTTTTTACGAAGAGGAGGTCGACAATGCCGTTG
ATAACCTGTCCAGCCTGCTTGAACCTTTAATCATGGTCGTACTGGGCACTCTGGTCGGGGGTCTGGTTATCGCCATGTAC
CTGCCAATCTTCCAGTTGGGTAATGTTGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6LDU0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.374

99.024

0.578
  pilC Acinetobacter baumannii D1279779

56.02

99.268

0.556
  pilC Acinetobacter baylyi ADP1

54.791

99.268

0.544
  pilC Legionella pneumophila strain ERS1305867

52.75

97.561

0.515
  pilG Neisseria gonorrhoeae MS11

43.489

99.268

0.432
  pilG Neisseria meningitidis 44/76-A

42.998

99.268

0.427
  pilC Vibrio cholerae strain A1552

43.325

96.829

0.42
  pilC Vibrio campbellii strain DS40M4

42.317

96.829

0.41
  pilC Thermus thermophilus HB27

39.9

97.805

0.39

Multiple sequence alignment