Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FOB45_RS20950 Genome accession   NZ_CP044086
Coordinates   2934838..2936055 (+) Length   405 a.a.
NCBI ID   WP_150347956.1    Uniprot ID   -
Organism   Pseudomonas luteola strain FDAARGOS_637     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2929838..2941055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB45_RS20940 (FOB45_20940) - 2932292..2932687 (-) 396 WP_244322630.1 pilin -
  FOB45_RS28650 - 2932691..2932801 (-) 111 Protein_2740 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FOB45_RS20945 (FOB45_20945) pilB 2933021..2934706 (+) 1686 WP_150347955.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FOB45_RS20950 (FOB45_20950) pilC 2934838..2936055 (+) 1218 WP_150347956.1 type II secretion system F family protein Machinery gene
  FOB45_RS20955 (FOB45_20955) pilD 2936055..2936924 (+) 870 WP_150347957.1 A24 family peptidase Machinery gene
  FOB45_RS20960 (FOB45_20960) coaE 2936924..2937538 (+) 615 WP_150347958.1 dephospho-CoA kinase -
  FOB45_RS20965 (FOB45_20965) yacG 2937531..2937734 (+) 204 WP_010797204.1 DNA gyrase inhibitor YacG -
  FOB45_RS20970 (FOB45_20970) - 2937825..2938298 (-) 474 WP_010797203.1 hypothetical protein -
  FOB45_RS20975 (FOB45_20975) - 2938502..2938984 (+) 483 WP_125887166.1 MOSC domain-containing protein -
  FOB45_RS20980 (FOB45_20980) - 2939089..2940387 (+) 1299 WP_150347959.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44313.06 Da        Isoelectric Point: 9.6385

>NTDB_id=387568 FOB45_RS20950 WP_150347956.1 2934838..2936055(+) (pilC) [Pseudomonas luteola strain FDAARGOS_637]
MADKALKMSAFTWEGTDRKGVKTKGEMTGLNPALVKAQLRKQGINPTRVRKKSVSIFSRGKKIKPMDIALFTRQLATMLG
AGVPLLQSFDIISEGFDNPNMRKLVDDIKQDVAAGNSLSSSLRKKPQYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
EQLKKKIKKAMTYPAAVVVVAIVVSAILLIKVVPQFQSVFEGFGAELPAFTLMVIGLSETLQEWWFIVLLALFALGFGFQ
MAHKRSEKFRDAVDRFVLKIPIVGAILYKSAIARYARTLSTTFAAGVPLVDALDSVSGATGNVVFRNAVDKIKQDVSTGM
QLNFSMRTTAVFTSMAVQMTAIGEESGALDEMLDKVATFYEEEVDNMVDSLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=387568 FOB45_RS20950 WP_150347956.1 2934838..2936055(+) (pilC) [Pseudomonas luteola strain FDAARGOS_637]
ATGGCCGACAAAGCATTAAAAATGAGCGCTTTTACCTGGGAGGGAACAGACCGTAAAGGCGTCAAGACCAAGGGCGAAAT
GACTGGACTGAACCCTGCCTTGGTCAAGGCCCAACTGCGCAAGCAAGGGATCAACCCCACGCGCGTACGCAAAAAATCAG
TCTCGATCTTCAGCCGCGGCAAAAAGATCAAGCCGATGGACATCGCCCTGTTCACTCGCCAGCTGGCTACCATGCTAGGG
GCAGGTGTTCCTTTGCTGCAATCGTTCGACATTATCAGCGAAGGCTTTGATAACCCGAACATGCGCAAACTGGTCGATGA
CATCAAGCAGGACGTGGCAGCGGGTAACAGCCTGTCTAGCTCGTTGCGTAAAAAGCCCCAATACTTCGATGATCTTTACT
GCAACCTAGTTGATGCTGGCGAGCAGTCCGGTGCGCTGGAAACGCTACTGGATCGCGTAGCGACCTACAAAGAAAAAACC
GAGCAGCTCAAGAAAAAAATAAAGAAAGCTATGACCTACCCTGCCGCGGTTGTAGTGGTAGCAATCGTGGTTTCAGCCAT
TCTATTGATCAAAGTTGTACCTCAGTTCCAATCCGTCTTCGAGGGCTTTGGCGCAGAGCTACCTGCGTTTACGTTGATGG
TGATTGGCCTTTCAGAAACCCTGCAAGAATGGTGGTTTATCGTTCTTTTGGCTCTTTTCGCGTTGGGTTTTGGCTTTCAG
ATGGCACACAAGAGGTCCGAGAAATTTCGCGATGCCGTTGATCGCTTTGTACTCAAAATACCCATCGTGGGCGCCATTCT
TTATAAGTCTGCGATTGCACGTTATGCACGTACCTTATCTACCACCTTTGCTGCGGGCGTACCGCTGGTGGATGCATTGG
ATTCGGTTTCCGGCGCTACGGGTAACGTTGTCTTCCGTAATGCGGTCGATAAGATCAAGCAAGACGTCTCGACCGGTATG
CAGTTGAACTTCTCCATGCGAACCACCGCGGTATTTACTTCAATGGCGGTACAGATGACGGCCATTGGTGAAGAGTCGGG
CGCACTGGACGAAATGCTGGATAAAGTAGCCACTTTCTATGAAGAAGAAGTGGACAACATGGTCGACAGCCTTACCGCTC
TGATGGAGCCCATGATCATGGCGGTTCTGGGCGTACTGGTGGGCGGTTTGATCATCGCCATGTACCTTCCTATCTTCCAG
TTGGGCTCGGTTGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

80.741

100

0.807
  pilC Acinetobacter baumannii D1279779

61.634

99.753

0.615
  pilC Acinetobacter baylyi ADP1

61.084

100

0.612
  pilC Legionella pneumophila strain ERS1305867

55.051

97.778

0.538
  pilG Neisseria meningitidis 44/76-A

45.32

100

0.454
  pilG Neisseria gonorrhoeae MS11

45.32

100

0.454
  pilC Vibrio cholerae strain A1552

42.963

100

0.43
  pilC Vibrio campbellii strain DS40M4

41.872

100

0.42
  pilC Thermus thermophilus HB27

38.462

99.506

0.383

Multiple sequence alignment