Detailed information NTG0387569

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FOB45_RS20955
• Genome accession: NZ_CP044086
• Coordinates: 2936055..2936924 (+)
• Length: 289 a.a.
• NCBI ID: WP_150347957.1
• Uniprot ID: -
• Organism: Pseudomonas luteola strain FDAARGOS_637
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2931055..2941924

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOB45_RS20940 (FOB45_20940)	-	2932292..2932687 (-)	396	WP_244322630.1	pilin	-
FOB45_RS28650	-	2932691..2932801 (-)	111	Protein_2740	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
FOB45_RS20945 (FOB45_20945)	pilB	2933021..2934706 (+)	1686	WP_150347955.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FOB45_RS20950 (FOB45_20950)	pilC	2934838..2936055 (+)	1218	WP_150347956.1	type II secretion system F family protein	Machinery gene
FOB45_RS20955 (FOB45_20955)	pilD	2936055..2936924 (+)	870	WP_150347957.1	A24 family peptidase	Machinery gene
FOB45_RS20960 (FOB45_20960)	coaE	2936924..2937538 (+)	615	WP_150347958.1	dephospho-CoA kinase	-
FOB45_RS20965 (FOB45_20965)	yacG	2937531..2937734 (+)	204	WP_010797204.1	DNA gyrase inhibitor YacG	-
FOB45_RS20970 (FOB45_20970)	-	2937825..2938298 (-)	474	WP_010797203.1	hypothetical protein	-
FOB45_RS20975 (FOB45_20975)	-	2938502..2938984 (+)	483	WP_125887166.1	MOSC domain-containing protein	-
FOB45_RS20980 (FOB45_20980)	-	2939089..2940387 (+)	1299	WP_150347959.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31911.80 Da
• Isoelectric Point: 6.5915

>NTDB_id=387569 FOB45_RS20955 WP_150347957.1 2936055..2936924(+) (pilD) [Pseudomonas luteola strain FDAARGOS_637]
MEAIELLATYPAAYLGCALVLGLLVGSFLNVVVHRLPKMLERDWIAQSRQMLELPSEGEAEPYNLAKPHSHCPHCQHRIR
PWENIPVISYVMLRGKCSSCKAPISARYPLVELTCGLLSLFVVWHFGFTWQAASALLLTWGLLAASLIDADHQTLPDVIV
LPLLWVGLLVNQFELFSSLSDAVWGAAAGYMSLWVVFQLFRLITGKEGMGFGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGIILLRLKNAENSTPIPFGPYLAIAGWIALLWGDQITGMYLYFAGF

Nucleotide

• Length: 870 bp

>NTDB_id=387569 FOB45_RS20955 WP_150347957.1 2936055..2936924(+) (pilD) [Pseudomonas luteola strain FDAARGOS_637]
ATGGAGGCTATCGAGCTTTTGGCAACCTACCCCGCCGCGTACTTGGGTTGTGCGCTGGTACTGGGCTTATTGGTTGGCAG
CTTTCTCAATGTAGTCGTACACCGGCTTCCCAAAATGCTTGAGCGGGACTGGATAGCCCAGTCTCGCCAAATGCTGGAGC
TACCCAGCGAAGGCGAAGCAGAGCCCTATAACCTTGCCAAGCCCCACTCCCATTGTCCTCACTGCCAACATCGCATTCGG
CCGTGGGAAAACATTCCTGTTATCAGCTATGTCATGCTGCGCGGCAAATGCTCCAGCTGTAAGGCGCCCATTAGTGCTCG
CTATCCGCTGGTTGAATTGACGTGCGGCCTACTTTCCCTGTTTGTCGTCTGGCATTTTGGCTTTACTTGGCAGGCAGCCA
GCGCCTTGTTACTGACCTGGGGGCTGCTCGCCGCCAGCCTGATCGATGCTGATCACCAGACTCTTCCAGACGTCATTGTT
CTTCCGCTGCTATGGGTTGGCTTGCTGGTTAACCAGTTTGAGTTGTTCTCAAGTCTCTCCGATGCAGTCTGGGGTGCAGC
GGCGGGCTATATGAGCTTGTGGGTGGTTTTCCAGCTTTTCAGGCTGATCACAGGCAAGGAAGGCATGGGCTTTGGTGACT
TCAAACTGCTGGCTATGTTAGGCGCCTGGGGCGGCTGGCAAATCCTGCCGCTTACGATATTACTGTCCTCTTTAGTGGGC
GCGATTCTCGGCATCATTCTGCTTCGCCTCAAGAATGCCGAAAACAGCACCCCGATACCGTTTGGGCCTTATCTAGCCAT
TGCGGGGTGGATTGCTTTGCTTTGGGGTGATCAAATAACAGGCATGTACCTTTACTTTGCCGGTTTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	55.273	95.156	0.526
pilD	Vibrio cholerae strain A1552	53.147	98.962	0.526
pilD	Acinetobacter nosocomialis M2	54.182	95.156	0.516
pilD	Vibrio campbellii strain DS40M4	49.47	97.924	0.484
pilD	Neisseria gonorrhoeae MS11	48.289	91.003	0.439