Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   F3L01_RS10585 Genome accession   NZ_CP043966
Coordinates   2061558..2061893 (+) Length   111 a.a.
NCBI ID   WP_000982020.1    Uniprot ID   -
Organism   Bacillus cereus strain H2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2056558..2066893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3L01_RS10560 (F3L01_10705) - 2056754..2057581 (-) 828 WP_000499733.1 hypothetical protein -
  F3L01_RS10565 (F3L01_10710) - 2057691..2058338 (+) 648 WP_000165966.1 HD domain-containing protein -
  F3L01_RS10570 (F3L01_10715) - 2058335..2060230 (+) 1896 Protein_2024 ABC-F family ATP-binding cassette domain-containing protein -
  F3L01_RS10575 (F3L01_10720) - 2060307..2061037 (+) 731 Protein_2025 Bax inhibitor-1/YccA family protein -
  F3L01_RS10580 (F3L01_10725) - 2061143..2061397 (+) 255 WP_000975138.1 DUF4318 domain-containing protein -
  F3L01_RS10585 (F3L01_10730) ssbA 2061558..2061893 (+) 336 WP_000982020.1 single-stranded DNA-binding protein Machinery gene
  F3L01_RS10590 (F3L01_10735) - 2062142..2063286 (+) 1145 Protein_2028 conserved virulence factor C family protein -
  F3L01_RS10595 (F3L01_10740) - 2063279..2063703 (+) 425 Protein_2029 DCC1-like thiol-disulfide oxidoreductase family protein -
  F3L01_RS10600 (F3L01_10745) - 2063755..2064190 (+) 436 Protein_2030 BrxA/BrxB family bacilliredoxin -
  F3L01_RS10605 (F3L01_10750) - 2064240..2065016 (+) 777 WP_000637459.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12769.69 Da        Isoelectric Point: 10.0770

>NTDB_id=386885 F3L01_RS10585 WP_000982020.1 2061558..2061893(+) (ssbA) [Bacillus cereus strain H2]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTKYCKKGSLVGITGRIQTS
NYDNEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=386885 F3L01_RS10585 WP_000982020.1 2061558..2061893(+) (ssbA) [Bacillus cereus strain H2]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGCAAATCGGCTGAGAATGTAACTAAATATTGTAAAAAGGGATCACTCGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACGATAATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

95.495

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

95.495

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

100

0.523
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

94.595

0.423
  ssbA Streptococcus mutans UA159

40

99.099

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae D39

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae R6

39.091

99.099

0.387
  ssbB/cilA Streptococcus mitis SK321

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

39.091

99.099

0.387

Multiple sequence alignment