Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F0Q17_RS19155 Genome accession   NZ_CP043579
Coordinates   4134118..4135359 (+) Length   413 a.a.
NCBI ID   WP_182310266.1    Uniprot ID   -
Organism   Aeromonas media strain R1-26     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4129118..4140359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0Q17_RS19130 nadC 4129251..4130126 (+) 876 WP_182310262.1 carboxylating nicotinate-nucleotide diphosphorylase -
  F0Q17_RS22200 pilA 4130437..4130529 (+) 93 WP_182310263.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  F0Q17_RS19140 - 4130599..4131873 (+) 1275 WP_011191341.1 IS4-like element ISApu2 family transposase -
  F0Q17_RS19145 - 4131884..4132285 (+) 402 WP_182310264.1 pilin -
  F0Q17_RS19150 pilB 4132282..4133988 (+) 1707 WP_182310265.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  F0Q17_RS19155 pilC 4134118..4135359 (+) 1242 WP_182310266.1 type II secretion system F family protein Machinery gene
  F0Q17_RS19160 pilD 4135440..4136312 (+) 873 WP_042649027.1 prepilin peptidase Machinery gene
  F0Q17_RS19165 coaE 4136331..4136945 (+) 615 WP_182310267.1 dephospho-CoA kinase -
  F0Q17_RS19170 zapD 4136983..4137705 (+) 723 WP_182310268.1 cell division protein ZapD -
  F0Q17_RS19175 yacG 4137715..4137909 (+) 195 WP_005332119.1 DNA gyrase inhibitor YacG -
  F0Q17_RS19180 mutT 4137985..4138389 (-) 405 WP_182310269.1 8-oxo-dGTP diphosphatase MutT -
  F0Q17_RS19185 - 4138398..4139582 (-) 1185 WP_049637195.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45523.55 Da        Isoelectric Point: 10.1464

>NTDB_id=385306 F0Q17_RS19155 WP_182310266.1 4134118..4135359(+) (pilC) [Aeromonas media strain R1-26]
MATLAQKRNTPKKVFSFRWHGFNRKGQKVSGEFQADSINTVKAELRKQGVNVTKVSKQGQGLFSKGGARIKPMDIAVISR
QITTMLSAGVPLVQSLQIIARGHEKSAVRELIGQIATDVETGTPLSEALRRHPRHFDALYCDLVDAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIIVTSILLLFVIPQFEEIFKSFGAELPAFTRFVIGISRFMQAWWYIIFGGTA
LAIFLYVRAWRKSQKVRDNTDRFILTIPVVGNILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAILAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVAAIFEQEVDDMVDGLTSLLEPIIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=385306 F0Q17_RS19155 WP_182310266.1 4134118..4135359(+) (pilC) [Aeromonas media strain R1-26]
ATGGCAACATTAGCGCAAAAACGTAACACACCCAAAAAGGTCTTCTCCTTCCGCTGGCATGGATTCAATCGCAAGGGACA
AAAGGTTTCCGGTGAGTTCCAGGCCGACAGCATCAACACCGTCAAGGCGGAGCTGCGCAAGCAGGGCGTCAATGTCACCA
AGGTCAGCAAGCAGGGCCAGGGCCTGTTTTCCAAGGGGGGTGCCCGGATCAAACCGATGGACATCGCCGTCATCTCCCGC
CAGATCACCACCATGCTCTCGGCCGGTGTGCCGCTGGTGCAAAGCCTGCAGATCATCGCCCGCGGTCATGAAAAGTCGGC
AGTACGCGAACTCATCGGTCAGATCGCCACCGATGTGGAAACCGGCACCCCGCTGTCGGAGGCGCTGCGCCGCCACCCCC
GCCACTTCGATGCGCTCTACTGCGATCTGGTAGACGCGGGGGAGCAGTCCGGCGCGCTGGAAACCATCTACGACCGGATT
GCCACATACCGCGAGAAGAGTGAGGCGCTGAAGTCCAAGATCAAGAAGGCCATGTTCTATCCCGCCATGGTCATCCTGGT
CGCCATCATCGTGACCTCCATCCTGCTGCTGTTCGTCATTCCCCAGTTCGAGGAGATCTTCAAGAGCTTCGGGGCAGAGC
TGCCAGCCTTCACCCGATTCGTCATCGGTATCTCCCGCTTCATGCAAGCTTGGTGGTATATCATCTTTGGTGGCACAGCC
TTGGCCATCTTCCTCTATGTGCGCGCCTGGCGAAAATCCCAGAAGGTACGGGACAACACCGACAGATTCATCCTCACCAT
TCCGGTCGTGGGCAACATACTGCACAAGGCGGCCATGGCCCGCTTCGCCCGAACCCTCTCCACCACCTTCTCCGCCGGGA
TACCTCTGGTGGATGCCCTGGTGTCAGCGGCCGGCGCCTCTGGCAACTATGTCTATCGCACGGCCATCCTGGCCATTCGC
AACGAAGTGGTGGCTGGCATGCAGATCAACGTCGCCATGCGTACCGTGGATCTCTTCCCAGACATGGTGATCCAGATGGT
GATGATTGGTGAAGAGTCAGGCGCCATCGATGACATGCTCTCCAAGGTTGCCGCCATCTTCGAGCAGGAGGTGGACGACA
TGGTCGATGGCCTCACCAGCCTGCTCGAACCCATCATCATGGTGGTGCTCGGGGTGCTGGTCGGTGGCATGGTCGTCGCC
ATGTACCTCCCCATCTTCAAGCTGGGCTCTGTGATACACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.071

95.884

0.547
  pilC Legionella pneumophila strain ERS1305867

53.333

98.063

0.523
  pilC Acinetobacter baumannii D1279779

51.372

97.094

0.499
  pilC Acinetobacter baylyi ADP1

50.882

96.126

0.489
  pilC Vibrio cholerae strain A1552

47.75

96.852

0.462
  pilC Vibrio campbellii strain DS40M4

46.482

96.368

0.448
  pilG Neisseria meningitidis 44/76-A

40.05

97.337

0.39
  pilG Neisseria gonorrhoeae MS11

40.05

97.337

0.39
  pilC Thermus thermophilus HB27

39

96.852

0.378

Multiple sequence alignment