Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | F0Q17_RS19150 | Genome accession | NZ_CP043579 |
| Coordinates | 4132282..4133988 (+) | Length | 568 a.a. |
| NCBI ID | WP_182310265.1 | Uniprot ID | - |
| Organism | Aeromonas media strain R1-26 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IS/Tn | 4130599..4131873 | 4132282..4133988 | flank | 409 |
Gene organization within MGE regions
Location: 4130599..4133988
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F0Q17_RS19140 | - | 4130599..4131873 (+) | 1275 | WP_011191341.1 | IS4-like element ISApu2 family transposase | - |
| F0Q17_RS19145 | - | 4131884..4132285 (+) | 402 | WP_182310264.1 | pilin | - |
| F0Q17_RS19150 | pilB | 4132282..4133988 (+) | 1707 | WP_182310265.1 | PilB family type IVa pilus assembly ATPase TapB | Machinery gene |
Sequence
Protein
Download Length: 568 a.a. Molecular weight: 62709.15 Da Isoelectric Point: 5.9723
>NTDB_id=385305 F0Q17_RS19150 WP_182310265.1 4132282..4133988(+) (pilB) [Aeromonas media strain R1-26]
MTSSLNSGLATSLAASSLLSEPDSQRYLSQARAQRKPFVTFLIENDILDSKALADFCELEYGVPLLDLAAFDLAEIPQKY
LNQKLIEKHHVLPIYTQGHTLYIAMSDPTNVSALEDFGFSFGLHTEALLVEESKLTAAIGKLMESEQDTLGMNHIDEAEI
SELEVSDESSRLDESINTADDDAPIVKYIHKIMMDAIKRGASDLHFEPYETKYRIRFRIDGILHEIATPPVNLANRFAAR
LKVMARLDIAERRLPQDGRIKLKISRNRSMDMRVNTLPTMWGEKVVIRLLDSSASRLNLDQLGFDERQKAQYLHALSKPQ
GMILVTGPTGSGKTVSLYTGLNILNTNEVNISTAEDPVEINLPGVNQVQINPKAGLTFASALRSFLRQDPDIVMVGEIRD
LETAEIAIKAAQTGHLVLSTLHTNSAAETLTRMMNMGVPAFNIASSVTLIMAQRLARKLCDHCKVPEAVPEAELLEFGFT
QQQLAAGLRLFKPVGCKECSGGYRGRVGIYEIMLMSENIAKLIMQGANSLQIAAIAQKEGMRTLRISGLEKARLGVTSLA
EINRITTN
MTSSLNSGLATSLAASSLLSEPDSQRYLSQARAQRKPFVTFLIENDILDSKALADFCELEYGVPLLDLAAFDLAEIPQKY
LNQKLIEKHHVLPIYTQGHTLYIAMSDPTNVSALEDFGFSFGLHTEALLVEESKLTAAIGKLMESEQDTLGMNHIDEAEI
SELEVSDESSRLDESINTADDDAPIVKYIHKIMMDAIKRGASDLHFEPYETKYRIRFRIDGILHEIATPPVNLANRFAAR
LKVMARLDIAERRLPQDGRIKLKISRNRSMDMRVNTLPTMWGEKVVIRLLDSSASRLNLDQLGFDERQKAQYLHALSKPQ
GMILVTGPTGSGKTVSLYTGLNILNTNEVNISTAEDPVEINLPGVNQVQINPKAGLTFASALRSFLRQDPDIVMVGEIRD
LETAEIAIKAAQTGHLVLSTLHTNSAAETLTRMMNMGVPAFNIASSVTLIMAQRLARKLCDHCKVPEAVPEAELLEFGFT
QQQLAAGLRLFKPVGCKECSGGYRGRVGIYEIMLMSENIAKLIMQGANSLQIAAIAQKEGMRTLRISGLEKARLGVTSLA
EINRITTN
Nucleotide
Download Length: 1707 bp
>NTDB_id=385305 F0Q17_RS19150 WP_182310265.1 4132282..4133988(+) (pilB) [Aeromonas media strain R1-26]
ATGACCTCTAGCCTGAATAGCGGCCTGGCCACCAGCCTGGCCGCTTCTTCCCTCCTCAGTGAGCCGGACTCACAGCGCTA
TCTGAGCCAGGCGAGGGCGCAGCGCAAGCCCTTTGTCACCTTTTTGATCGAGAACGATATCCTCGACAGCAAGGCGCTGG
CGGATTTCTGCGAGCTTGAATATGGGGTACCTCTGCTGGATCTTGCCGCCTTCGACCTGGCCGAGATCCCGCAGAAATAC
CTCAATCAAAAGCTGATTGAAAAGCACCACGTGTTGCCCATCTATACCCAGGGCCACACCCTCTATATCGCCATGTCGGA
TCCGACCAATGTGTCGGCTCTGGAGGATTTTGGTTTCAGTTTTGGCCTGCACACGGAAGCCCTGCTGGTCGAAGAGAGCA
AGCTGACCGCCGCCATCGGCAAGCTGATGGAGAGCGAGCAGGATACCCTGGGCATGAATCATATCGACGAGGCCGAGATC
TCCGAACTCGAGGTCTCCGACGAGAGTTCCCGCCTCGACGAGAGCATCAACACCGCGGACGACGATGCCCCCATCGTCAA
ATACATCCACAAGATCATGATGGATGCCATCAAGCGTGGCGCATCCGACCTGCATTTCGAACCCTATGAGACCAAGTACC
GGATCCGCTTCCGGATCGACGGCATACTGCACGAAATCGCCACCCCGCCGGTCAATCTGGCGAACCGTTTCGCGGCCCGT
CTCAAGGTGATGGCGAGGCTCGATATCGCCGAGCGGCGCCTGCCCCAGGATGGGCGGATCAAGCTGAAGATCTCCCGCAA
CAGATCCATGGACATGCGGGTCAACACCCTGCCCACCATGTGGGGAGAAAAGGTAGTCATTCGCCTGCTAGACTCGTCAG
CATCTCGTCTCAACCTTGATCAACTCGGCTTCGACGAACGCCAGAAGGCGCAATATCTGCATGCCCTCTCCAAGCCACAG
GGCATGATACTGGTCACGGGCCCCACGGGGTCGGGCAAGACGGTGTCACTCTATACCGGTCTCAACATCCTCAATACCAA
CGAGGTCAACATCTCCACCGCCGAGGATCCGGTGGAGATCAACCTGCCCGGCGTCAACCAGGTGCAGATCAATCCCAAGG
CGGGGCTCACCTTCGCCAGCGCCCTGCGCTCCTTCCTGCGCCAGGATCCCGACATCGTCATGGTGGGGGAGATCCGGGAC
CTGGAAACCGCCGAGATTGCCATCAAGGCGGCCCAGACCGGACATCTGGTATTGTCGACCCTGCACACCAACTCGGCGGC
CGAGACCCTGACCCGGATGATGAACATGGGGGTGCCCGCCTTCAATATCGCCTCCTCGGTGACCCTGATCATGGCCCAGC
GCCTCGCCCGCAAGCTGTGCGATCACTGCAAGGTGCCCGAGGCGGTGCCGGAAGCCGAATTGCTGGAGTTCGGTTTTACC
CAGCAACAGCTGGCCGCCGGTTTGCGGTTGTTCAAACCGGTCGGTTGCAAGGAGTGTTCGGGAGGATACAGAGGACGGGT
CGGCATCTATGAAATCATGCTGATGTCGGAGAACATCGCCAAGCTGATCATGCAGGGAGCAAACTCGCTGCAGATCGCTG
CCATCGCCCAGAAGGAGGGTATGCGTACCCTGCGCATTTCCGGCCTGGAGAAGGCCCGTCTGGGGGTCACCAGCCTGGCC
GAGATCAACAGGATCACGACCAACTGA
ATGACCTCTAGCCTGAATAGCGGCCTGGCCACCAGCCTGGCCGCTTCTTCCCTCCTCAGTGAGCCGGACTCACAGCGCTA
TCTGAGCCAGGCGAGGGCGCAGCGCAAGCCCTTTGTCACCTTTTTGATCGAGAACGATATCCTCGACAGCAAGGCGCTGG
CGGATTTCTGCGAGCTTGAATATGGGGTACCTCTGCTGGATCTTGCCGCCTTCGACCTGGCCGAGATCCCGCAGAAATAC
CTCAATCAAAAGCTGATTGAAAAGCACCACGTGTTGCCCATCTATACCCAGGGCCACACCCTCTATATCGCCATGTCGGA
TCCGACCAATGTGTCGGCTCTGGAGGATTTTGGTTTCAGTTTTGGCCTGCACACGGAAGCCCTGCTGGTCGAAGAGAGCA
AGCTGACCGCCGCCATCGGCAAGCTGATGGAGAGCGAGCAGGATACCCTGGGCATGAATCATATCGACGAGGCCGAGATC
TCCGAACTCGAGGTCTCCGACGAGAGTTCCCGCCTCGACGAGAGCATCAACACCGCGGACGACGATGCCCCCATCGTCAA
ATACATCCACAAGATCATGATGGATGCCATCAAGCGTGGCGCATCCGACCTGCATTTCGAACCCTATGAGACCAAGTACC
GGATCCGCTTCCGGATCGACGGCATACTGCACGAAATCGCCACCCCGCCGGTCAATCTGGCGAACCGTTTCGCGGCCCGT
CTCAAGGTGATGGCGAGGCTCGATATCGCCGAGCGGCGCCTGCCCCAGGATGGGCGGATCAAGCTGAAGATCTCCCGCAA
CAGATCCATGGACATGCGGGTCAACACCCTGCCCACCATGTGGGGAGAAAAGGTAGTCATTCGCCTGCTAGACTCGTCAG
CATCTCGTCTCAACCTTGATCAACTCGGCTTCGACGAACGCCAGAAGGCGCAATATCTGCATGCCCTCTCCAAGCCACAG
GGCATGATACTGGTCACGGGCCCCACGGGGTCGGGCAAGACGGTGTCACTCTATACCGGTCTCAACATCCTCAATACCAA
CGAGGTCAACATCTCCACCGCCGAGGATCCGGTGGAGATCAACCTGCCCGGCGTCAACCAGGTGCAGATCAATCCCAAGG
CGGGGCTCACCTTCGCCAGCGCCCTGCGCTCCTTCCTGCGCCAGGATCCCGACATCGTCATGGTGGGGGAGATCCGGGAC
CTGGAAACCGCCGAGATTGCCATCAAGGCGGCCCAGACCGGACATCTGGTATTGTCGACCCTGCACACCAACTCGGCGGC
CGAGACCCTGACCCGGATGATGAACATGGGGGTGCCCGCCTTCAATATCGCCTCCTCGGTGACCCTGATCATGGCCCAGC
GCCTCGCCCGCAAGCTGTGCGATCACTGCAAGGTGCCCGAGGCGGTGCCGGAAGCCGAATTGCTGGAGTTCGGTTTTACC
CAGCAACAGCTGGCCGCCGGTTTGCGGTTGTTCAAACCGGTCGGTTGCAAGGAGTGTTCGGGAGGATACAGAGGACGGGT
CGGCATCTATGAAATCATGCTGATGTCGGAGAACATCGCCAAGCTGATCATGCAGGGAGCAAACTCGCTGCAGATCGCTG
CCATCGCCCAGAAGGAGGGTATGCGTACCCTGCGCATTTCCGGCCTGGAGAAGGCCCGTCTGGGGGTCACCAGCCTGGCC
GAGATCAACAGGATCACGACCAACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baumannii D1279779 |
54.85 |
99.824 |
0.548 |
| pilB | Acinetobacter baylyi ADP1 |
54.707 |
99.12 |
0.542 |
| pilB | Legionella pneumophila strain ERS1305867 |
54.321 |
99.824 |
0.542 |
| pilB | Vibrio cholerae strain A1552 |
53.014 |
99.296 |
0.526 |
| pilB | Vibrio campbellii strain DS40M4 |
50 |
99.648 |
0.498 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
49.556 |
99.12 |
0.491 |
| pilF | Neisseria gonorrhoeae MS11 |
46.208 |
99.824 |
0.461 |
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
38.406 |
97.183 |
0.373 |
| pilF | Thermus thermophilus HB27 |
39.583 |
92.958 |
0.368 |