Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   F0Q17_RS19160 Genome accession   NZ_CP043579
Coordinates   4135440..4136312 (+) Length   290 a.a.
NCBI ID   WP_042649027.1    Uniprot ID   -
Organism   Aeromonas media strain R1-26     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4130440..4141312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0Q17_RS19140 - 4130599..4131873 (+) 1275 WP_011191341.1 IS4-like element ISApu2 family transposase -
  F0Q17_RS19145 - 4131884..4132285 (+) 402 WP_182310264.1 pilin -
  F0Q17_RS19150 pilB 4132282..4133988 (+) 1707 WP_182310265.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  F0Q17_RS19155 pilC 4134118..4135359 (+) 1242 WP_182310266.1 type II secretion system F family protein Machinery gene
  F0Q17_RS19160 pilD 4135440..4136312 (+) 873 WP_042649027.1 prepilin peptidase Machinery gene
  F0Q17_RS19165 coaE 4136331..4136945 (+) 615 WP_182310267.1 dephospho-CoA kinase -
  F0Q17_RS19170 zapD 4136983..4137705 (+) 723 WP_182310268.1 cell division protein ZapD -
  F0Q17_RS19175 yacG 4137715..4137909 (+) 195 WP_005332119.1 DNA gyrase inhibitor YacG -
  F0Q17_RS19180 mutT 4137985..4138389 (-) 405 WP_182310269.1 8-oxo-dGTP diphosphatase MutT -
  F0Q17_RS19185 - 4138398..4139582 (-) 1185 WP_049637195.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32052.32 Da        Isoelectric Point: 7.0918

>NTDB_id=385307 F0Q17_RS19160 WP_042649027.1 4135440..4136312(+) (pilD) [Aeromonas media strain R1-26]
MVPLIELAQGLPWLYLSLIFLFSLMIGSFLNVVIHRLPIMLEREWHADYRDYFGSEVATSPAEPYNLMVPRSRCPHCDHP
ISALENIPLLSWLWLKGRCRQCKAPISARYPLVELLTALLSVTVAATLTPGWGALAALALTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGHGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWIALLWGDNITRWYLDIVL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=385307 F0Q17_RS19160 WP_042649027.1 4135440..4136312(+) (pilD) [Aeromonas media strain R1-26]
ATGGTGCCTCTGATCGAACTGGCCCAGGGCCTGCCCTGGCTCTATCTCTCCCTGATTTTTCTCTTCTCCCTGATGATTGG
CAGCTTCCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCATGCAGACTACCGTGATTACTTCG
GCAGCGAGGTTGCCACTTCCCCCGCCGAACCTTACAACCTGATGGTACCGCGCTCTCGCTGCCCCCACTGCGATCACCCC
ATAAGCGCGCTGGAGAACATCCCCCTGCTGAGCTGGCTCTGGCTCAAGGGACGCTGCCGACAATGCAAGGCGCCAATTTC
GGCCCGCTATCCCCTGGTCGAGCTGCTGACCGCCCTGTTGTCGGTCACCGTTGCGGCGACCCTCACTCCCGGCTGGGGAG
CCCTGGCAGCCCTCGCACTGACCTGGGTACTGGTGGCCCTCACCTTCATCGATCTGGACAAGATGCTGCTGCCGGACCAG
CTCACCCTGCCGCTGCTGTGGGGCGGTCTGTTGTTCAATCTGGCAGGCGGCTTTGTGCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCTGGCTATCTGGTGCTCTGGAGTCTCTACTGGGCGTTCAAGCTGCTGACCGGCAAGGAGGGGATGGGTCATG
GCGACTTCAAGCTGCTGGCGGCACTCGGTGCCTGGCTGGGCTGGCAGGCGCTGCCCATAGTGCTGCTGCTCTCTTCACTG
GTCGGCGCCATCATCGGGATCGGACTTATCCTGCTGCGCAACCATCATCAGGGCAAACCCATCCCCTTTGGCCCCTACCT
CGCCATCGCGGGCTGGATAGCGCTGCTGTGGGGGGATAACATCACCCGCTGGTATCTGGACATCGTTCTCTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(139-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

61.404

98.276

0.603
  pilD Vibrio campbellii strain DS40M4

56.055

99.655

0.559
  pilD Acinetobacter nosocomialis M2

52.518

95.862

0.503
  pilD Acinetobacter baumannii D1279779

52.158

95.862

0.5
  pilD Neisseria gonorrhoeae MS11

49.049

90.69

0.445

Multiple sequence alignment