Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   HG566_RS07625 Genome accession   NZ_CP051501
Coordinates   96820..97116 (+) Length   98 a.a.
NCBI ID   WP_272928212.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-002     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 91820..102116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG566_RS00475 (HG566_00475) - 92721..93434 (-) 714 WP_120909255.1 hypothetical protein -
  HG566_RS00480 (HG566_00480) thrC 93540..95000 (-) 1461 WP_202164624.1 threonine synthase -
  HG566_RS00485 (HG566_00485) - 95203..95466 (+) 264 WP_202164626.1 hypothetical protein -
  HG566_RS00490 (HG566_00490) - 95460..96323 (+) 864 WP_202164628.1 cache domain-containing protein -
  HG566_RS00495 (HG566_00495) - 96350..96802 (+) 453 WP_202164630.1 hypothetical protein -
  HG566_RS07625 (HG566_00500) pilJ 96820..97116 (+) 297 WP_272928212.1 methyl-accepting chemotaxis protein Machinery gene
  HG566_RS00505 (HG566_00505) - 97083..97229 (+) 147 WP_202164632.1 hypothetical protein -
  HG566_RS00510 (HG566_00510) - 97229..98335 (+) 1107 WP_202164633.1 epoxyqueuosine reductase QueH -
  HG566_RS00515 (HG566_00515) - 98451..99212 (+) 762 WP_202164634.1 outer membrane beta-barrel protein -
  HG566_RS00520 (HG566_00520) - 99195..99977 (-) 783 WP_202164635.1 glycosyltransferase family 2 protein -
  HG566_RS00525 (HG566_00525) tlpB 100009..101706 (-) 1698 WP_202164636.1 methyl-accepting chemotaxis protein TlpB -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11042.03 Da        Isoelectric Point: 11.3189

>NTDB_id=384760 HG566_RS07625 WP_272928212.1 96820..97116(+) (pilJ) [Helicobacter pylori strain PUNO-002]
MIEQGQDIKSIVEIIRDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQNRSAKLKLILIFSFKAFQTRAR
ALKTRLKKWKKSTLLLKP

Nucleotide


Download         Length: 297 bp        

>NTDB_id=384760 HG566_RS07625 WP_272928212.1 96820..97116(+) (pilJ) [Helicobacter pylori strain PUNO-002]
ATGATTGAACAAGGGCAAGACATTAAAAGCATTGTAGAAATCATTAGAGATATTGCTGATCAAACCAATCTTTTAGCCCT
GAACGCTGCTATTGAAGCCGCAAGGGCCGGCGAGCATGGCAGAGGCTTTGCGGTGGTGGCTGATGAGGTGAGGAAGCTCG
CTGAAAGGACGCAAAATCGCTCAGCGAAATTGAAGCTAATATTAATATTCTCGTTCAAAGCATTTCAGACACGAGCGAGA
GCATTAAAAACCAGGTTAAAGAAGTGGAAGAAATCAACGCTTCTATTGAAGCCTTAA

Domains

Predicted by InterProScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(4-82)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

64.912

58.163

0.378

Multiple sequence alignment