Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FYK34_RS13925 Genome accession   NZ_CP043473
Coordinates   2942600..2943817 (-) Length   405 a.a.
NCBI ID   WP_149297372.1    Uniprot ID   A0A5C1DJ59
Organism   Chromobacterium paludis strain IIBBL 257-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2937600..2948817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYK34_RS13895 (FYK34_13895) tsaE 2938335..2938823 (+) 489 WP_407923608.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  FYK34_RS13900 (FYK34_13900) - 2938781..2940019 (+) 1239 WP_149297363.1 N-acetylmuramoyl-L-alanine amidase -
  FYK34_RS13905 (FYK34_13905) yacG 2940086..2940280 (-) 195 WP_149297365.1 DNA gyrase inhibitor YacG -
  FYK34_RS13910 (FYK34_13910) zapD 2940286..2941044 (-) 759 WP_149297367.1 cell division protein ZapD -
  FYK34_RS13915 (FYK34_13915) coaE 2941081..2941695 (-) 615 WP_149297368.1 dephospho-CoA kinase -
  FYK34_RS13920 (FYK34_13920) pilD 2941680..2942600 (-) 921 WP_149297370.1 A24 family peptidase Machinery gene
  FYK34_RS13925 (FYK34_13925) pilC 2942600..2943817 (-) 1218 WP_149297372.1 type II secretion system F family protein Machinery gene
  FYK34_RS13930 (FYK34_13930) pilF 2943879..2945582 (-) 1704 WP_149297374.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FYK34_RS13935 (FYK34_13935) - 2945777..2946922 (-) 1146 WP_149297376.1 porin -
  FYK34_RS13940 (FYK34_13940) comE 2947495..2947815 (-) 321 WP_149297378.1 helix-hairpin-helix domain-containing protein Machinery gene
  FYK34_RS13945 (FYK34_13945) - 2947867..2948688 (-) 822 WP_149297380.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44756.66 Da        Isoelectric Point: 10.0226

>NTDB_id=384392 FYK34_RS13925 WP_149297372.1 2942600..2943817(-) (pilC) [Chromobacterium paludis strain IIBBL 257-1]
MATTKKASPGHIWEWEGKDKTGRIIRGELRAESDNVAKMQLRRQGINVVKIRKRRAGFGRKITDKDITLFTRQLSTMMKA
GVPLLQAFDIAAKGHNNPAVTRLLLEVRADVETGMSLAESFRKRPLYFDKLFCNIIAAGETGGVLDALLDKLATYKEKVM
AIKSKIKSAMIYPTAIVATAFVITAVIMIYVIPAFKDLFSSFGANLPAPTLFVIWLSDKFVHYWWLIFGSIFGGIFAFFY
AFKRTPKMQEQMDRILLQLPVIGDIIRKATIARWARTLSTLFTAGVPLVEALESVGGAAGNQVYAEATKRIQSDVNTGSS
LSFSMQRTDLFPNMVLQMTAIGEESGSLDQMLDKVADFYEEEVDNAVAALSSLLEPAIMVILGVLIGGLVIAMYMPIFKM
GQVVG

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=384392 FYK34_RS13925 WP_149297372.1 2942600..2943817(-) (pilC) [Chromobacterium paludis strain IIBBL 257-1]
ATGGCGACGACGAAGAAGGCAAGTCCGGGTCATATCTGGGAGTGGGAAGGCAAGGACAAGACCGGGCGCATCATCCGCGG
CGAGTTGCGCGCGGAATCGGACAATGTGGCCAAGATGCAGCTGCGGCGCCAGGGCATCAATGTGGTGAAAATCCGCAAGC
GCCGCGCCGGCTTTGGACGCAAGATCACCGACAAGGACATCACGCTGTTCACCCGTCAGCTGTCGACGATGATGAAGGCG
GGCGTGCCTTTGCTGCAAGCCTTCGATATTGCCGCCAAGGGGCATAACAATCCGGCGGTGACGCGCCTGCTGCTGGAGGT
GAGGGCCGATGTGGAGACCGGCATGTCCTTGGCGGAGTCCTTCCGCAAGCGGCCGCTGTATTTCGACAAGCTGTTCTGCA
ACATCATTGCCGCGGGGGAGACCGGCGGCGTGTTGGACGCCTTGCTGGACAAATTGGCCACTTACAAGGAAAAAGTGATG
GCCATCAAGTCCAAGATCAAGTCGGCGATGATCTATCCGACGGCCATTGTCGCCACGGCCTTCGTCATCACTGCGGTGAT
CATGATTTACGTGATCCCGGCGTTCAAGGATCTGTTCTCCAGCTTTGGCGCCAATCTGCCGGCGCCGACCTTGTTCGTGA
TCTGGCTGTCGGACAAGTTCGTCCATTATTGGTGGCTGATCTTCGGCTCGATCTTCGGCGGGATTTTCGCGTTTTTCTAT
GCCTTCAAGCGCACGCCCAAGATGCAGGAACAGATGGACCGCATCCTGCTGCAGCTGCCTGTCATCGGCGACATCATACG
CAAGGCCACCATCGCGCGCTGGGCGCGCACGCTGTCCACCCTGTTCACCGCCGGCGTGCCGCTGGTGGAGGCGCTGGAGT
CGGTGGGCGGCGCGGCGGGCAACCAGGTTTATGCCGAGGCGACCAAGCGCATCCAGTCTGATGTCAATACCGGCTCCAGC
CTCAGCTTTTCGATGCAGCGCACCGATTTGTTTCCCAATATGGTGCTGCAGATGACCGCCATCGGCGAGGAATCCGGCTC
CTTGGACCAGATGTTGGACAAGGTGGCGGACTTTTACGAAGAAGAAGTCGATAACGCGGTGGCCGCGCTATCCAGCCTGC
TGGAGCCGGCCATCATGGTGATACTTGGTGTCTTGATAGGGGGCTTGGTGATCGCGATGTATATGCCGATTTTCAAAATG
GGCCAGGTGGTGGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C1DJ59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.96

99.753

0.538
  pilC Pseudomonas stutzeri DSM 10701

53.102

99.506

0.528
  pilC Acinetobacter baumannii D1279779

50.37

100

0.504
  pilG Neisseria gonorrhoeae MS11

51.662

96.543

0.499
  pilC Acinetobacter baylyi ADP1

49.63

100

0.496
  pilG Neisseria meningitidis 44/76-A

51.407

96.543

0.496
  pilC Vibrio campbellii strain DS40M4

37.065

99.259

0.368
  pilC Thermus thermophilus HB27

36.591

98.519

0.36

Multiple sequence alignment