Detailed information NTG0384391

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FYK34_RS13920
• Genome accession: NZ_CP043473
• Coordinates: 2941680..2942600 (-)
• Length: 306 a.a.
• NCBI ID: WP_149297370.1
• Uniprot ID: A0A5C1DIZ6
• Organism: Chromobacterium paludis strain IIBBL 257-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2936680..2947600

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FYK34_RS13885 (FYK34_13885)	-	2936836..2937252 (+)	417	WP_149297358.1	MaoC family dehydratase	-
FYK34_RS13890 (FYK34_13890)	queG	2937254..2938330 (-)	1077	WP_149297359.1	tRNA epoxyqueuosine(34) reductase QueG	-
FYK34_RS13895 (FYK34_13895)	tsaE	2938335..2938823 (+)	489	WP_407923608.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	-
FYK34_RS13900 (FYK34_13900)	-	2938781..2940019 (+)	1239	WP_149297363.1	N-acetylmuramoyl-L-alanine amidase	-
FYK34_RS13905 (FYK34_13905)	yacG	2940086..2940280 (-)	195	WP_149297365.1	DNA gyrase inhibitor YacG	-
FYK34_RS13910 (FYK34_13910)	zapD	2940286..2941044 (-)	759	WP_149297367.1	cell division protein ZapD	-
FYK34_RS13915 (FYK34_13915)	coaE	2941081..2941695 (-)	615	WP_149297368.1	dephospho-CoA kinase	-
FYK34_RS13920 (FYK34_13920)	pilD	2941680..2942600 (-)	921	WP_149297370.1	A24 family peptidase	Machinery gene
FYK34_RS13925 (FYK34_13925)	pilC	2942600..2943817 (-)	1218	WP_149297372.1	type II secretion system F family protein	Machinery gene
FYK34_RS13930 (FYK34_13930)	pilF	2943879..2945582 (-)	1704	WP_149297374.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FYK34_RS13935 (FYK34_13935)	-	2945777..2946922 (-)	1146	WP_149297376.1	porin	-

Sequence

Protein

• Length: 306 a.a.
• Molecular weight: 33081.40 Da
• Isoelectric Point: 7.8923

>NTDB_id=384391 FYK34_RS13920 WP_149297370.1 2941680..2942600(-) (pilD) [Chromobacterium paludis strain IIBBL 257-1]
MLQDIAWLLATHPAWLVGVALVFGLMVGSFLNVVIHRLPRMLEDEFLSESVDYLADCERMPALRLAAEAAAAALEARPSY
NLWRPASHCPSCQAPVRAWQNIPVLSFVLLRGRCGHCGAAIRARYPLVELLCGAAFGVLAWRFGWSMPLLGAMALTATLL
ALTFIDLDTLLLPDSLTLPLLWAGLLFNLYTGWVPLSSVVLGAALGYVSLWLVYKLFKLATGKEGMGYGDFKLLAALGAW
LGWSMLPLIVLLSSLVGALCGVAMVLASRAGRGQAIPFGPYLAAAGWIALVWGPQIVEGYLSWLSR

Nucleotide

• Length: 921 bp

>NTDB_id=384391 FYK34_RS13920 WP_149297370.1 2941680..2942600(-) (pilD) [Chromobacterium paludis strain IIBBL 257-1]
ATGCTGCAGGACATCGCTTGGTTGCTGGCCACGCATCCGGCCTGGCTGGTGGGCGTGGCCCTGGTTTTCGGCCTGATGGT
AGGTAGTTTTCTGAACGTGGTGATCCACCGCCTGCCGCGCATGCTGGAGGATGAGTTCCTGTCCGAGAGCGTGGATTATC
TGGCGGATTGCGAGCGCATGCCGGCGCTGCGGCTGGCGGCGGAAGCGGCTGCGGCAGCGCTGGAGGCGAGGCCGTCCTAC
AACCTGTGGCGGCCTGCCTCGCATTGCCCATCGTGCCAAGCGCCTGTGCGCGCCTGGCAAAACATTCCCGTGCTGAGCTT
TGTGCTGCTGCGCGGCCGCTGCGGCCATTGCGGCGCGGCCATCCGCGCGCGCTATCCGCTGGTGGAGCTGCTGTGCGGCG
CCGCGTTCGGCGTCTTGGCCTGGCGCTTCGGCTGGAGCATGCCCTTGCTTGGCGCGATGGCGCTGACGGCGACTCTGCTG
GCGCTGACTTTCATCGACCTGGACACCTTGCTGCTGCCGGACAGCCTGACGCTGCCGCTGTTGTGGGCCGGCTTGCTGTT
CAATCTGTATACCGGATGGGTGCCTTTGTCATCCGTCGTGCTGGGCGCTGCGTTGGGGTATGTGTCCTTGTGGCTGGTGT
ATAAGTTGTTCAAGCTGGCGACGGGCAAGGAAGGGATGGGCTATGGCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGG
CTGGGCTGGAGCATGTTGCCGCTGATCGTGTTGTTGTCGTCTTTGGTCGGCGCGCTATGCGGCGTGGCGATGGTGCTCGC
TTCGCGGGCTGGCCGCGGCCAAGCCATTCCGTTTGGTCCGTATCTGGCCGCCGCTGGTTGGATCGCGCTGGTGTGGGGAC
CGCAAATCGTGGAGGGCTATCTGTCATGGCTCTCCCGGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-143)

• Type IV leader peptidase family (Peptidase_A24) (153-261)

3D structure

• AlphaFold DB: A0A5C1DIZ6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.515	95.098	0.48
pilD	Acinetobacter baumannii D1279779	48.505	98.366	0.477
pilD	Acinetobacter nosocomialis M2	47.841	98.366	0.471
pilD	Neisseria gonorrhoeae MS11	49.31	94.771	0.467
pilD	Vibrio campbellii strain DS40M4	48.464	95.752	0.464