Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   FYK34_RS13940 Genome accession   NZ_CP043473
Coordinates   2947495..2947815 (-) Length   106 a.a.
NCBI ID   WP_149297378.1    Uniprot ID   A0A5C1DIG9
Organism   Chromobacterium paludis strain IIBBL 257-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2942495..2952815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYK34_RS13925 (FYK34_13925) pilC 2942600..2943817 (-) 1218 WP_149297372.1 type II secretion system F family protein Machinery gene
  FYK34_RS13930 (FYK34_13930) pilF 2943879..2945582 (-) 1704 WP_149297374.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FYK34_RS13935 (FYK34_13935) - 2945777..2946922 (-) 1146 WP_149297376.1 porin -
  FYK34_RS13940 (FYK34_13940) comE 2947495..2947815 (-) 321 WP_149297378.1 helix-hairpin-helix domain-containing protein Machinery gene
  FYK34_RS13945 (FYK34_13945) - 2947867..2948688 (-) 822 WP_149297380.1 inner membrane protein YpjD -
  FYK34_RS13950 (FYK34_13950) ffh 2948802..2950157 (+) 1356 WP_149297382.1 signal recognition particle protein -
  FYK34_RS13955 (FYK34_13955) purB 2950319..2951689 (+) 1371 WP_149297385.1 adenylosuccinate lyase -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 10899.96 Da        Isoelectric Point: 10.8138

>NTDB_id=384394 FYK34_RS13940 WP_149297378.1 2947495..2947815(-) (comE) [Chromobacterium paludis strain IIBBL 257-1]
MKKLFAAVAALLLLCNVAWAAVNLNTATPQQLETLKGIGPAKAKAIVDYRAKNGPFKTVDDLKKVSGIGDKTLEKLRKDL
VVGGAAPSPAAKPSPAAKPAAKPAAK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=384394 FYK34_RS13940 WP_149297378.1 2947495..2947815(-) (comE) [Chromobacterium paludis strain IIBBL 257-1]
ATGAAAAAACTGTTCGCCGCCGTGGCGGCTTTATTGTTGTTGTGCAATGTAGCCTGGGCCGCCGTGAACCTGAATACCGC
CACGCCCCAGCAGCTGGAGACGCTGAAGGGAATAGGCCCGGCCAAGGCCAAGGCCATCGTCGACTACCGCGCCAAGAACG
GCCCGTTCAAAACGGTGGATGATTTGAAGAAGGTTTCCGGCATCGGCGATAAGACGCTGGAAAAACTGCGCAAAGACCTG
GTGGTCGGCGGCGCAGCGCCGTCGCCTGCCGCCAAGCCGTCCCCTGCCGCCAAGCCGGCGGCTAAGCCCGCAGCCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C1DIG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

55.914

87.736

0.491
  comE Neisseria gonorrhoeae MS11

55.914

87.736

0.491
  comE Neisseria gonorrhoeae MS11

55.914

87.736

0.491
  comE Neisseria gonorrhoeae MS11

55.914

87.736

0.491
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.765

80.189

0.415

Multiple sequence alignment