Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FYN22_RS01265 Genome accession   NZ_CP043307
Coordinates   280067..282145 (+) Length   692 a.a.
NCBI ID   WP_148825386.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain Acsw19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 275067..287145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYN22_RS01245 (FYN22_01245) pilM 277087..278145 (+) 1059 WP_058870420.1 pilus assembly protein PilM Machinery gene
  FYN22_RS01250 (FYN22_01250) pilN 278145..278801 (+) 657 WP_148825384.1 PilN domain-containing protein Machinery gene
  FYN22_RS01255 (FYN22_01255) pilO 278798..279520 (+) 723 WP_148825385.1 type 4a pilus biogenesis protein PilO Machinery gene
  FYN22_RS01260 (FYN22_01260) pilP 279520..280047 (+) 528 WP_094148569.1 pilus assembly protein PilP Machinery gene
  FYN22_RS01265 (FYN22_01265) pilQ 280067..282145 (+) 2079 WP_148825386.1 type IV pilus secretin PilQ Machinery gene
  FYN22_RS01270 (FYN22_01270) - 282234..282716 (+) 483 WP_249303512.1 shikimate kinase -
  FYN22_RS01275 (FYN22_01275) aroB 282747..283832 (+) 1086 WP_148825387.1 3-dehydroquinate synthase -
  FYN22_RS01280 (FYN22_01280) - 283840..284679 (+) 840 WP_148825388.1 hypothetical protein -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75032.10 Da        Isoelectric Point: 5.1275

>NTDB_id=382752 FYN22_RS01265 WP_148825386.1 280067..282145(+) (pilQ) [Acinetobacter johnsonii strain Acsw19]
MKNSAKDFIFGDGNTMNHMFRQFSMGAIAMAVMQAASAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLV
LDFDKAQQSLKQGSIAVATAEASTVDVTSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSANPALATPVAAARSEQGIS
NIGFQRGSDGEGQVVIDLKGSNTPVDVKQQGSKIVVRVLGNKIPAHLSRRLNVNDFATPVSTIDAQNDGSNGLITIQSNG
SFEYMAYQAEDKLTISLKRPEDKNPMKPKAPSAYTGKKISLDFQDIEVRRVLQLLADFTGINMVASDTVQGNITLRLKDV
PWDQALDIIMKTKNLDKRRNGNVIWIAPVAELIKSEDDEAKAIAQSIKLAPIQTDYIQLSYAKAADVLKLLEDSRNSKGA
ASNGTAGTDSLALESLLSSRGSVVADLRTNTLIVNDTSQNIDKIRRMIDLLDVAVKQVMVEARIVTAQTDFSRELGIRWS
AQKLNNNPVWGGDFQPSFDLGVDLATGTAGTFNFGLLKISDYMLNLELTALQADGHGEVLSAPKVLTGDKQKAYILRGDQ
IPYQTWSADTGTTTSFVDANLKLEVTPSITPDGRVQMSLKIEKDTVGTLTSAGYLINTNELETNVLVDDGETVVLGGIFD
DIKQNQYEKVPFFGDLPVVGALFKNNTKSSAQTELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=382752 FYN22_RS01265 WP_148825386.1 280067..282145(+) (pilQ) [Acinetobacter johnsonii strain Acsw19]
ATGAAAAATAGTGCTAAAGATTTTATATTTGGGGATGGCAATACGATGAACCATATGTTCCGTCAGTTTTCAATGGGTGC
AATTGCAATGGCGGTGATGCAGGCTGCAAGTGCGCAAGTCAGTATTACGAATATTGTGCCGATGCAAATTCCGGGACAGG
GAACAGAAATTCGTGTCATGTTCAACGGTTTGCCACCACAGCCACAAGCCTATCAGTTGGAACAGCCATCACGTTTGGTT
TTGGATTTTGATAAAGCACAGCAGAGCTTAAAACAAGGCAGTATTGCGGTGGCAACGGCTGAAGCAAGTACAGTAGATGT
AACTTCAGATGCGCAGCGTTCACGTTTAACTGTAAATTTGGCTGATGCCGGTGCATTTACTACACGTGTTGAAGGTAATA
CCTTTATTCTGAAAATTAACTCAGCGAACCCAGCGCTAGCAACACCTGTTGCTGCGGCGCGTTCAGAGCAAGGCATTTCA
AATATTGGCTTCCAACGCGGTTCAGATGGTGAAGGCCAAGTTGTCATTGATCTAAAAGGTAGCAATACTCCTGTCGATGT
GAAACAGCAAGGCAGTAAAATTGTGGTGCGCGTTTTGGGGAATAAAATTCCTGCCCATTTATCACGCCGTCTCAATGTGA
ATGATTTTGCCACGCCTGTATCGACCATTGATGCACAAAATGATGGCAGTAACGGCCTAATCACGATCCAATCGAATGGC
AGTTTTGAATATATGGCTTATCAGGCAGAAGATAAGCTCACCATTAGTTTAAAGCGTCCTGAAGATAAAAATCCAATGAA
GCCTAAAGCGCCAAGTGCTTATACAGGCAAAAAGATTTCTTTAGATTTTCAAGATATTGAAGTGCGACGTGTATTACAGC
TCTTAGCTGATTTTACAGGCATTAACATGGTGGCTTCTGACACTGTACAAGGTAATATTACCTTGCGCCTGAAGGATGTT
CCGTGGGATCAGGCGCTTGATATCATTATGAAAACCAAGAACTTGGATAAACGACGTAATGGTAATGTAATTTGGATCGC
ACCTGTAGCTGAACTGATCAAATCTGAGGATGATGAAGCTAAAGCCATTGCACAAAGTATTAAACTTGCACCAATTCAAA
CCGATTATATTCAGTTGAGCTATGCGAAAGCTGCTGATGTTTTAAAATTGCTAGAAGATTCTCGAAATAGCAAAGGGGCG
GCATCCAACGGTACGGCTGGCACAGATTCACTAGCTTTAGAAAGCTTATTGAGTTCACGCGGTAGTGTGGTTGCTGATTT
ACGAACCAATACTTTAATCGTAAACGACACATCGCAGAACATTGATAAGATCCGCCGGATGATTGACTTACTTGATGTTG
CAGTGAAACAGGTGATGGTTGAAGCCCGTATTGTAACTGCACAAACAGATTTCTCTCGCGAATTGGGAATTCGTTGGAGT
GCGCAAAAACTCAATAACAATCCTGTGTGGGGTGGGGATTTCCAACCGAGTTTTGATTTAGGGGTAGATTTGGCAACGGG
TACGGCGGGAACGTTTAACTTTGGTTTGTTAAAAATCTCAGACTATATGTTGAATCTTGAGTTAACAGCGCTGCAAGCAG
ATGGACATGGAGAAGTGTTGTCTGCCCCGAAAGTACTTACGGGCGATAAGCAGAAAGCTTATATTTTGCGTGGGGACCAA
ATTCCTTATCAAACGTGGAGTGCGGATACAGGAACAACAACTAGTTTTGTTGATGCGAATTTGAAGTTGGAAGTCACGCC
AAGTATTACACCTGATGGTCGCGTACAAATGTCGCTTAAAATTGAAAAAGATACTGTTGGTACACTAACATCAGCAGGGT
ATTTAATTAATACGAATGAACTTGAAACCAATGTTTTGGTTGATGATGGTGAAACAGTCGTACTTGGGGGTATTTTTGAT
GATATTAAGCAAAATCAATATGAGAAAGTTCCATTTTTTGGTGACCTGCCTGTAGTCGGTGCTTTATTTAAAAATAATAC
CAAGTCTAGTGCGCAAACTGAGTTGCTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(305-348)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-457)

Bacterial type II and III secretion system protein (Secretin)

(530-684)

AMIN domain (AMIN)

(55-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

65.928

100

0.688
  pilQ Acinetobacter baumannii strain A118

65.789

100

0.686
  comQ Acinetobacter baylyi ADP1

62.869

100

0.646
  pilQ Pseudomonas aeruginosa PAK

39.623

99.566

0.395
  pilQ Legionella pneumophila strain Lp02

37.591

99.566

0.374
  pilQ Legionella pneumophila strain ERS1305867

37.628

98.699

0.371

Multiple sequence alignment