Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   FYN22_RS01255 Genome accession   NZ_CP043307
Coordinates   278798..279520 (+) Length   240 a.a.
NCBI ID   WP_148825385.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain Acsw19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 273798..284520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYN22_RS01240 (FYN22_01240) ponA 274393..276921 (-) 2529 WP_148825383.1 penicillin-binding protein PBP1a -
  FYN22_RS01245 (FYN22_01245) pilM 277087..278145 (+) 1059 WP_058870420.1 pilus assembly protein PilM Machinery gene
  FYN22_RS01250 (FYN22_01250) pilN 278145..278801 (+) 657 WP_148825384.1 PilN domain-containing protein Machinery gene
  FYN22_RS01255 (FYN22_01255) pilO 278798..279520 (+) 723 WP_148825385.1 type 4a pilus biogenesis protein PilO Machinery gene
  FYN22_RS01260 (FYN22_01260) pilP 279520..280047 (+) 528 WP_094148569.1 pilus assembly protein PilP Machinery gene
  FYN22_RS01265 (FYN22_01265) pilQ 280067..282145 (+) 2079 WP_148825386.1 type IV pilus secretin PilQ Machinery gene
  FYN22_RS01270 (FYN22_01270) - 282234..282716 (+) 483 WP_249303512.1 shikimate kinase -
  FYN22_RS01275 (FYN22_01275) aroB 282747..283832 (+) 1086 WP_148825387.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 26988.43 Da        Isoelectric Point: 4.9937

>NTDB_id=382750 FYN22_RS01255 WP_148825385.1 278798..279520(+) (pilO) [Acinetobacter johnsonii strain Acsw19]
MSRDEFEELTSENHAVTKKKMTVDKFFQQFNTLDPNNYGSWPFSVKLTCWIFIILLIGALGYFVVIKPKLDAISNAHAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVSGVNSGLKFKNIRLEPEIRQEFFIEQP
ISIEATGDYHSFGSFVSGIAALPRIVTLHDFDISASSNNEKKTDIPQISYSVKAKTYRYVGATAAAGVENTAKADAGGAQ

Nucleotide


Download         Length: 723 bp        

>NTDB_id=382750 FYN22_RS01255 WP_148825385.1 278798..279520(+) (pilO) [Acinetobacter johnsonii strain Acsw19]
ATGAGTCGCGATGAATTTGAAGAATTAACATCAGAAAACCATGCTGTAACCAAGAAGAAAATGACGGTTGATAAGTTTTT
TCAACAGTTTAATACCTTAGATCCAAACAATTACGGCAGTTGGCCCTTTTCAGTCAAATTGACTTGTTGGATCTTTATCA
TTTTATTGATAGGTGCTTTGGGCTATTTTGTCGTGATTAAGCCGAAGCTTGATGCGATTTCAAATGCACATGCACAAGAA
CAAAATTTACTGAATGAGTTTCGTGAAAAAGATTCAAAATTACGTAACTTGCAGCAATATCAAGCGCAATTGCAAGAAAT
GGAAGCTAATTTCAATCAGCAGTTAGAACAGTTGCCGAAAGAAACTGAAATTCCTGGTTTGGTTGAAGATATCAACGTGA
GCGGCGTAAATTCTGGATTAAAGTTTAAAAATATTCGTTTAGAGCCAGAAATTCGCCAAGAGTTCTTTATCGAACAGCCG
ATTTCCATTGAAGCGACGGGTGATTATCATTCTTTTGGTTCATTTGTCAGTGGAATTGCAGCTTTGCCACGTATTGTGAC
CTTGCATGACTTCGATATCTCAGCATCAAGTAACAATGAGAAAAAGACGGATATTCCGCAAATTTCATACAGTGTAAAAG
CGAAAACCTATCGTTATGTCGGGGCGACAGCTGCTGCAGGTGTGGAAAATACAGCTAAAGCAGATGCAGGAGGTGCTCAG
TAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.385

99.583

0.721
  comO Acinetobacter baylyi ADP1

68.163

100

0.696

Multiple sequence alignment