Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   acear_RS11840 Genome accession   NC_014378
Coordinates   2448263..2448649 (-) Length   128 a.a.
NCBI ID   WP_013279253.1    Uniprot ID   D9QUL1
Organism   Acetohalobium arabaticum DSM 5501     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2443263..2453649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  acear_RS11810 (Acear_2325) dnaB 2444251..2445591 (-) 1341 WP_013279247.1 replicative DNA helicase -
  acear_RS11815 (Acear_2326) - 2445611..2445802 (-) 192 WP_013279248.1 S16 family serine protease -
  acear_RS11820 (Acear_2327) rplI 2446131..2446577 (-) 447 WP_013279249.1 50S ribosomal protein L9 -
  acear_RS11825 (Acear_2328) - 2446675..2447574 (-) 900 WP_013279250.1 YybS family protein -
  acear_RS11830 (Acear_2329) - 2447590..2447913 (-) 324 WP_013279251.1 MazG-like family protein -
  acear_RS11835 (Acear_2330) rpsR 2448022..2448237 (-) 216 WP_013279252.1 30S ribosomal protein S18 -
  acear_RS11840 (Acear_2331) ssbA 2448263..2448649 (-) 387 WP_013279253.1 single-stranded DNA-binding protein Machinery gene
  acear_RS11845 (Acear_2332) rpsF 2448689..2448976 (-) 288 WP_013279254.1 30S ribosomal protein S6 -
  acear_RS11850 (Acear_2333) ychF 2449076..2450173 (-) 1098 WP_013279255.1 redox-regulated ATPase YchF -
  acear_RS11855 (Acear_2334) - 2450263..2450448 (-) 186 WP_013279256.1 DUF951 domain-containing protein -
  acear_RS11860 (Acear_2335) - 2450526..2451572 (-) 1047 WP_013279257.1 hypothetical protein -
  acear_RS11865 (Acear_2336) yyaC 2451710..2452420 (+) 711 WP_013279258.1 spore protease YyaC -
  acear_RS12460 (Acear_2337) - 2452457..2453002 (-) 546 WP_083771386.1 polymer-forming cytoskeletal protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14642.21 Da        Isoelectric Point: 4.3715

>NTDB_id=38033 acear_RS11840 WP_013279253.1 2448263..2448649(-) (ssbA) [Acetohalobium arabaticum DSM 5501]
MLNKIILIGRLTDDPELRYTPNGVAVANFSLAVERPYTNQEGERDVDFIDIVVWRKQAENCANHLGKGRLVAVEGRLQIR
SYENNEGQQRRVSEVVANNVRFLDWPSDDRSQQGQADNLEEDDIDVPF

Nucleotide


Download         Length: 387 bp        

>NTDB_id=38033 acear_RS11840 WP_013279253.1 2448263..2448649(-) (ssbA) [Acetohalobium arabaticum DSM 5501]
GTGTTAAATAAGATTATTTTGATTGGACGATTAACTGATGATCCGGAATTAAGATATACTCCTAATGGAGTAGCAGTTGC
TAACTTTTCTTTGGCAGTTGAACGTCCTTATACTAATCAAGAAGGCGAGCGAGATGTAGATTTTATTGATATAGTCGTCT
GGAGAAAACAGGCAGAAAACTGTGCCAACCACCTAGGAAAAGGAAGATTAGTTGCAGTAGAAGGGCGTTTACAGATTAGA
AGTTATGAAAATAATGAAGGTCAACAAAGAAGAGTATCAGAAGTTGTAGCTAATAATGTTCGCTTTCTGGATTGGCCTAG
TGATGATCGTTCTCAACAGGGACAAGCAGATAATCTTGAGGAAGACGATATAGACGTTCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9QUL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.462

81.25

0.516
  ssb Latilactobacillus sakei subsp. sakei 23K

51.754

89.063

0.461
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.885

81.25

0.43
  ssbB/cilA Streptococcus mitis SK321

39.855

100

0.43
  ssbB/cilA Streptococcus mitis NCTC 12261

39.855

100

0.43
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.855

100

0.43
  ssbB/cilA Streptococcus pneumoniae Rx1

39.13

100

0.422
  ssbB/cilA Streptococcus pneumoniae D39

39.13

100

0.422
  ssbB/cilA Streptococcus pneumoniae R6

39.13

100

0.422
  ssbB Streptococcus sobrinus strain NIDR 6715-7

38.406

100

0.414
  ssb Neisseria gonorrhoeae MS11

45.192

81.25

0.367
  ssb Neisseria meningitidis MC58

45.192

81.25

0.367

Multiple sequence alignment