Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FED50_RS12670 Genome accession   NZ_CP042929
Coordinates   2124353..2124688 (+) Length   111 a.a.
NCBI ID   WP_000982020.1    Uniprot ID   -
Organism   Bacillus cereus strain G1-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2119353..2129688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED50_RS12645 - 2119548..2120375 (-) 828 WP_000499733.1 hypothetical protein -
  FED50_RS12650 - 2120485..2121132 (+) 648 WP_000165966.1 HD domain-containing protein -
  FED50_RS12655 - 2121129..2123024 (+) 1896 WP_000783160.1 ABC-F family ATP-binding cassette domain-containing protein -
  FED50_RS12660 - 2123100..2123831 (+) 732 WP_088054351.1 Bax inhibitor-1/YccA family protein -
  FED50_RS12665 - 2123937..2124191 (+) 255 WP_000975138.1 DUF4318 domain-containing protein -
  FED50_RS12670 ssbA 2124353..2124688 (+) 336 WP_000982020.1 single-stranded DNA-binding protein Machinery gene
  FED50_RS12675 - 2124937..2126064 (+) 1128 WP_000692554.1 conserved virulence factor C family protein -
  FED50_RS12680 - 2126068..2126451 (+) 384 WP_000634884.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  FED50_RS12685 - 2126535..2126969 (+) 435 WP_000063706.1 BrxA/BrxB family bacilliredoxin -
  FED50_RS12690 - 2127019..2127795 (+) 777 WP_000637459.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12769.69 Da        Isoelectric Point: 10.0770

>NTDB_id=379429 FED50_RS12670 WP_000982020.1 2124353..2124688(+) (ssbA) [Bacillus cereus strain G1-1]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTKYCKKGSLVGITGRIQTS
NYDNEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=379429 FED50_RS12670 WP_000982020.1 2124353..2124688(+) (ssbA) [Bacillus cereus strain G1-1]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGCAAATCGGCTGAGAATGTAACTAAATATTGTAAAAAGGGATCACTCGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACGATAATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

95.495

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

95.495

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

100

0.523
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

94.595

0.423
  ssbA Streptococcus mutans UA159

40

99.099

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae D39

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae R6

39.091

99.099

0.387
  ssbB/cilA Streptococcus mitis SK321

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

39.091

99.099

0.387

Multiple sequence alignment